| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_5010 |
|---|
| Symbol | |
|---|
| ID | 6289895 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010683 |
|---|
| Strand | - |
|---|
| Start bp | 57480 |
|---|
| End bp | 58496 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642627404 |
|---|
| Product | TrbL/VirB6 plasmid conjugal transfer protein |
|---|
| Protein accession | YP_001901370 |
|---|
| Protein GI | 187930884 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3704] Type IV secretory pathway, VirB6 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 0.12085 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGACA TCCTCAGCAC AATCAACCAA CTGTTCGCCG CCGTACAAAG TGCGGGCTCA
TCTCTCGAAA ACCTCTTTGT TTCTGACGGC ATCGACTTGC TTGCGGCGCT TGGATTGATC
GTCGCGACCT GGCACACCTT GCTGTGGCTG CTCGATGGTG ATTTTCCGAA CTACTTCTCG
ATGATGTTGC GCCACGTCGT CAAGGTCGCG GTACTCCTCC TGATCCTCAC CACCTGGTCA
GGCACGGTGC ACAGCTACTT CGTGAGCAAC ATGCAAACCA TGGCCGATCG CGTCGCCGGT
GGCAGTGCCG ACTCGAATAC GCTCGCCAAC ACCCTGGTCG GCGCCATCCA GACGGTCATG
TCCGGCACGC GCACCCAATC GCACACAGTC TGTACCGATG TCCCGGATTA CACGCTGGAC
GGCGGCATTC CTACTGGCAC CAGCCACCAG GATTGTCATG ACGTCAACGA CAACGCATTG
GACAACACCA GTTTCTGGAC AGCCTTCAAA ACGTTGCCAG TTGTGCTGCT CACGCTTCTC
GCAAAGGCCA TCGCTCTGAT CGCCATGGTG CTCTGCGTGC TGATCTTCGT TGTGGTCGTG
CAAATGGGCT CGATCCTGCT TCACATCGCC TTTTGCCTTG GTCCCATTCT TGTGCCCTGG
TTCGTCTTCC CGCCAACGGA ATTTCTCTTC GAGAACTGGT TGAGAGCCGT CATTGGCGCA
GGCCTCTACA AGGTCATCGC CTGGATCATG ATGGGCCTCG TCATGAAGGG CGTTGTGCCT
GGCTTCAATG CCTTGCTGCA GAAGGTCGCC GCGACCAACG GCGTCGGCAG CGAGATCTAC
TACAACACGG CCTATCTGGC CCTGATCGCC CTCGCCCTCG TCGCCTCGAT CGGCGCGTTC
TTGATGTGGC AGGTCCCGGC AATCGCCAGC ACGTACGCCG GCGGCGGCGG AGCTTCGCTC
AAGGGCTTTG GCAAAGGCGC TATTTCGAAG ATGGCACAAG GTAACGGAGC ATCCTGA
|
|---|
| Protein sequence | MDDILSTINQ LFAAVQSAGS SLENLFVSDG IDLLAALGLI VATWHTLLWL LDGDFPNYFS
MMLRHVVKVA VLLLILTTWS GTVHSYFVSN MQTMADRVAG GSADSNTLAN TLVGAIQTVM
SGTRTQSHTV CTDVPDYTLD GGIPTGTSHQ DCHDVNDNAL DNTSFWTAFK TLPVVLLTLL
AKAIALIAMV LCVLIFVVVV QMGSILLHIA FCLGPILVPW FVFPPTEFLF ENWLRAVIGA
GLYKVIAWIM MGLVMKGVVP GFNALLQKVA ATNGVGSEIY YNTAYLALIA LALVASIGAF
LMWQVPAIAS TYAGGGGASL KGFGKGAISK MAQGNGAS
|
|---|
| |