Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_5008 |
Symbol | |
ID | 6289893 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010683 |
Strand | - |
Start bp | 55802 |
End bp | 56755 |
Gene Length | 954 bp |
Protein Length | 317 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642627402 |
Product | Conjugal transfer protein TrbG/VirB9/CagX |
Protein accession | YP_001901368 |
Protein GI | 187930882 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 0.116389 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGACGC TACCTCGCGC CATTCTCATC ATTGCTGCGA TGGCAACGCA TGCCGCATCG GTCTATGCCG ATGTCCCTGC AGCCGCTCCT CGCCCCCAGG GCGAGTTCGG CCGCATGTCG AAGGTTGCGC CGGCAGCTCG CGCGGCGTCG CCCTGCGCCA AGTCTTCTGC TTTCGGCCCC TTTGCTGAGC AGCAAGACCC GACGCTTGCG ACCTACGCCT ACGACGCGGA TTACACATAT CCGATTCCGA TGCGGCCCAA TCAGCAGACG CACCTGGTGC TGGGTGACGA CGAGACGTTG GTGTCGTTCA CGCTCGGCGA CCGAAACAAG AAGCTCTGGC CAACGATGCC ATCGGTCACC AAGCGCGACC TCTTCATCGT GCCGGCTGCA GCTGGACAGC GCGCGGCCGC GACGATCATC ACGTCGAAAC GACGCTACGA GCTTCAACTG TGCTCGGGTG ACGACGGCCC GGCATATCAA CGTGTGAGTT GGCAATACAC AGACACGTTG GCCGATGGTG TCGGCGCGAG CCCGACGGCA TTCGGTTTCG AGATGGCGGC TACGCCTGGT GTACCAGGTC GCCCAGAAGC GGGAGGCTCG AAAACGGGGA GCCCGCGCAT CGACGCGACG CGCATGAACA CGAACTACCG CATCGAGGGC AACGCCGAGT TCAAGCCGGT GATGGTGTTC GACGATGGCC GCATGACGTA TTACCAACTG CCGCACGACG CCAAGCTGTC GGCCGTGTTC ATCCTGGACA AGGATGGCCA GGGTGAAATG GCGCGCGTGA TTCCGCTCGG CAACGACATG TACCAGATCC AGGAGGTTGT CACGTACGGC GCGCTGCTCA AGCGAGGCAA GGACGAGGTG CGGATCTTCA ATGGCAAGGG GTCAGGCTGT GGTTTCTTCA GCTGCGATAC TAAGCCTGTG AAGAACATCG ATGGGGGCGC TTGA
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Protein sequence | MKTLPRAILI IAAMATHAAS VYADVPAAAP RPQGEFGRMS KVAPAARAAS PCAKSSAFGP FAEQQDPTLA TYAYDADYTY PIPMRPNQQT HLVLGDDETL VSFTLGDRNK KLWPTMPSVT KRDLFIVPAA AGQRAAATII TSKRRYELQL CSGDDGPAYQ RVSWQYTDTL ADGVGASPTA FGFEMAATPG VPGRPEAGGS KTGSPRIDAT RMNTNYRIEG NAEFKPVMVF DDGRMTYYQL PHDAKLSAVF ILDKDGQGEM ARVIPLGNDM YQIQEVVTYG ALLKRGKDEV RIFNGKGSGC GFFSCDTKPV KNIDGGA
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