Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_4992 |
Symbol | |
ID | 6289905 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010683 |
Strand | - |
Start bp | 44304 |
End bp | 45800 |
Gene Length | 1497 bp |
Protein Length | 498 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642627387 |
Product | Carbohydrate-selective porin OprB |
Protein accession | YP_001901353 |
Protein GI | 187930867 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3659] Carbohydrate-selective porin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000000000000230615 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.00966153 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCTGTTTT TTCCCCTTAT TCAACACATT TGGGTGGCAG TGCGTTCGCT TTCTGTAGTG CGAGCCACAG TCCTTAGCCA GGTCGCCCGT CGCCGTTCAG CTCAGCTGTC CATGGCAGTG CTGATGTCTG CCTTGGCTTG CGTTGCCCAC GCAGAAAATA CCGTCCTGGC CGAAACCCCG CCTACTTCTT CGGCGGAGGA TCAGAATGCC GTGGGTTCTA AATCGCCTGC TTCTGCCGAG CAAGCGCCGG CAATGCCGGA GGCACAGTGG TGGAATTTCC ACGCGCAGGC CACTCATATC ACCCAGTGGC ACTCCAAGTT CCGAGCCCCC TACGCTGGCG CGAACTCTTT GGCCTCCGAC GGCGAGAGCA GTGAAACCAC CGACATGACG CTCTTCGTTG GGCTGCGTCT TTGGCATGGA GCCGAGTTGT ATGCGAACCC CGAAATTGAT CAGGGCTTTG GCTTGAGCAA CACGCTCGGT GTGGCCGGCT TTCCTAGCGG AGGTGCATAC AAAGTCGGCA ACAACACGCC TTACCATAAG CTGCCGCGGC TTTTCCTGCG ACAGACCATC AACCTGGGGG GGGAGTCTGA ACCGTTGGAG TCAGCGGCAA ATCAACTCGC TGGGTCGAGA TCCGCTGACA ACATCACCGT CACCGTCGGC AAATTTGCCG TAGTGGACGT CTTTGACACC AACAGCTACG CGCATGATCC ACGTGCAGAC TTCTTGAACT GGTCTGTTAT CGAAGCCGGT GCTTTCGATT ATGCGGCGGA CGCGTGGGGG TACACGCGCG GTGCTGCGGT GGAGTGGACA CAATCTTGGT GGACCGTGCG CGGGGGCTTC TTTGCCCTGT CAACGACACC GAATAGCGAG TCCATCGATG TAGGCTTCAA GCAGCATGAA TGGGTCGGCG AAATCGAAGC GCGCCATCAG TTGTTGGGCC GTCCGGGCAA GTTGAAATTC CTGGCCTTCG TGAACCGCGG CTATATGGGC CGCTATGACG ATGCGGTGAG TCTGGCGCAG CAGACAGGAT CGACGCCAGA TACATCCTTG GTCAGGCAGT TCGCCTCCCG ACGTGGCGTC GCGCTCAATG TTGAGCAAGA ACTGGCAAAT GATCTGGGTT TCTTTGCTCG GGCCAGCATG AATGACGGCA ACAAAGAGAC CTTTGACTTC ACCGATATCA ATCAGTCAGT TTCTGCGGGC CTTTCCATGT CCGGTAGCTG CTGGGGGCGT TCCAAAGACA GGCTTGGCGT TGCTTTTGCA GTTAACGGTT TGTCCAAGGC GGCGAGGCAG TATTTTGCGG CCGGCGGGTT GGGCGTCCTG ATCGGGGACG GCGCACTGAA CTACGGTACT GAGCGGATCG CTGAAATTTA CTACACTTGG GCAGTCATGC CTCATGTCAC TGCTGGGCTC GACTACCAGT ACATTGTCCA CCCCGCCTAT AACCGGGACC GGGGACCTGT TTCAGTCGTA GCCGCACGCC TTCATCTGGA TTTTTGA
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Protein sequence | MLFFPLIQHI WVAVRSLSVV RATVLSQVAR RRSAQLSMAV LMSALACVAH AENTVLAETP PTSSAEDQNA VGSKSPASAE QAPAMPEAQW WNFHAQATHI TQWHSKFRAP YAGANSLASD GESSETTDMT LFVGLRLWHG AELYANPEID QGFGLSNTLG VAGFPSGGAY KVGNNTPYHK LPRLFLRQTI NLGGESEPLE SAANQLAGSR SADNITVTVG KFAVVDVFDT NSYAHDPRAD FLNWSVIEAG AFDYAADAWG YTRGAAVEWT QSWWTVRGGF FALSTTPNSE SIDVGFKQHE WVGEIEARHQ LLGRPGKLKF LAFVNRGYMG RYDDAVSLAQ QTGSTPDTSL VRQFASRRGV ALNVEQELAN DLGFFARASM NDGNKETFDF TDINQSVSAG LSMSGSCWGR SKDRLGVAFA VNGLSKAARQ YFAAGGLGVL IGDGALNYGT ERIAEIYYTW AVMPHVTAGL DYQYIVHPAY NRDRGPVSVV AARLHLDF
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