Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_4406 |
Symbol | |
ID | 6286025 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010678 |
Strand | - |
Start bp | 712094 |
End bp | 714484 |
Gene Length | 2391 bp |
Protein Length | 796 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642618886 |
Product | hypothetical protein |
Protein accession | YP_001892927 |
Protein GI | 187926582 |
COG category | [S] Function unknown [V] Defense mechanisms |
COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins [COG3876] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.343081 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGAACGCG CGCAATCGTT ACGATCCAGC CAACTTGCCG CGATAGTCGC GGTAGTGACA GCGGCGCTGT TGGCCTGCAT GCAGAGTGGG CAGGCCGCGC CCACAGCCAA CGACCCTGGG CCGCTGGGTA CGCCAGTGCC CATGCACGAG CTGGAAGCCG TAGTTGCTGC GCAGATTGCC GATGCCAATG TGGCCGGAGC TGTCGTCGCG ATCGGTGAAG CCAATGCGGT GCGCGAACGT GTTGCGCTGG GTCAGCGATC CGCCGGTCCC GCCGAGCCGA TGACCGAAGA CACGATCTTC GATCTCGCAT CGCTCACCAA GGCAGTGGCC ACGGCCACGG CGGTACTGCA ACTGGCAGAG CGCGGACGTT TGGAACTGGA CGCGCCGGCC AGCCGTTACT GGCCGGCCTT CGGCGACGTA GGGAAGGCAG GCATCACCCT ACGGCAATTG CTCAATCACA CGTCTGGACT CCCTTCGGGC CTGGCTGCCC GATCGGAACT CCGCAGCCAC GCCACGGTGC TTCACGCCAT CGAAATCATG CCCCCGATAG GGGAGCCGGG GCGCAATGTC ATCTACAGCG ATCTCAACTA TGTCGCCTTG GGCGAGCTTG TCCAGCGTGT CAGCGGGATG GGACTGGACG CATGGTGCGC GCAGCATATC TTTCGACCGC TTGGCATGCG CGACACCGCG TTCCGTCCGA GCCACAGGGC GATTGCCCGT ATCGCGCCGA CCATCGTGCG CAACGGACGA TGGCTTCGCG GCAACGTGCA TGATCCGACC GCCGCCGCAC TGGGGGGTGT CTCCGGCAAT GCGGGCTTGT TCTCCACGGC GGATGACCTC GCGCTGTTCG CCAGGATGCT TCTCAACGGG GGCAGCCTGG GGGGCCACCA AATCTTGCAA CCGGACAGCG TTGCCCTGCT GTTGACGCCC GACGGTTCGA CTGCCGTGGA GGCGACGCGC ACGTTGGGTT GGGAAGTGCA GGCGCCGTTG ATCCCCAACC GCTATCGCGC ACCGCGCGTG GGGCTCGTTC AGCATCTGGG CTACACCGGA ACCGGCTTAT GGATCGACTT GGTCACGCGC CGGTTTGTCA TTGTGCTCAC GAGCCGCCTG TATCCGGACG AGCGGGGTAA CGCCATGCCG TTGCGTGAAG CCGTCCTGAA TCTGGTATCG AGCACTGCGC CGCTGCTCTC TGGTCAGCAG ATCGCCACGC GTGCCCCGAC CATGGCCGAC GCTGTGATCA GCGCGGAACG GCGCTTACCC ACGGCGGTGG GTCCCGTACG GACAGGCATC GACGTGCTCG AGGCCGGCGG CTTCGCACTG CTTGTTGGAA GGCGGGTCGG CCTGGTCACG AACCACAGTG GCTTCGATGC GCAGGGGCGG CGCACCATCG ATGTACTCAG TCAGGCACCC GGTGTGCGGT TGAACGCGAT CTTCGCACCG GAGCACGGTA TCGGCACCGA TCTCGACGCG CGCTTTGGTG ACACGATCGA CCCGCGGTCC AACGTGATCG TCCATAGCCT TTATGGCAAC AGCAATGGCA TGCCGCGCAG CGCGCTGGCC GATCTGGACG TCCTGGTGTT TGACCTCCAG GACGCCGGCG TGCGGTTCTT TACCTACCTT GCCACCCTGG GGGCGACGCT GGAAGCTGCT GCGAAGGCTC ATATCCCAGT GCTGGTGCTG GACCGTCCCA ACCCGCTCGG CGGTGATCTG GTGGGTGGGC CGGTATCCGA TACGGCGGAC CGCTCATTGA CGAACTATGT GCCGCTGCCG CTTGTGCACG GCATGACGAT CGGCGAGCTT GCCAGGTTGC TGAACGGGGA ACTGCACATC GGGGCGGCGC TGCATGTGGT GGCCATGGAG CAGTACGACC GTGCAATGCG CTTTGCCAAC ACCGGGCTGG GTTGGGTTCC GCCATCGCCG AACCTGCGCG ATCTTTCTGC CTTGGAGCGA TATCCGGATG TGGGGTTGGT CGAGGGCGCA CGTGTGAGCG TAGGCAGAGG CACGACGGCG CCGTTTGGCA TGGTAGGAGC GCCATGGATG GACGGCGCGG CGCTCGCGCG AGAACTCAAT GCGCTGGACA CGGGCGCCAT CTATACACCC GTCCATTTCG TTCCTGCGGA AGGGCCGTAC CATGGCCGCT CGTGCTCGGG TGTGGCGATC CACCGGGTGT CAGCTCTGAC CCGCCCGGGC CGCATCGGTT TAGCGCTCGC CCGCGTACTG TCGCAACGTT ATCCCGAGCA GTTCAAGCTG GAGGCGATCC GCACGTCTGT CGGGTCGGAG ACGGTCTGGG CGATGCTGCG TGACGGCATT GCGCTGGACG CGATCGAGCG AGCCTACACC GCACAGGCCG ATGTCTTTCT TTCCCAGCGC GCGGCATATC TGCTGTATTG A
|
Protein sequence | MERAQSLRSS QLAAIVAVVT AALLACMQSG QAAPTANDPG PLGTPVPMHE LEAVVAAQIA DANVAGAVVA IGEANAVRER VALGQRSAGP AEPMTEDTIF DLASLTKAVA TATAVLQLAE RGRLELDAPA SRYWPAFGDV GKAGITLRQL LNHTSGLPSG LAARSELRSH ATVLHAIEIM PPIGEPGRNV IYSDLNYVAL GELVQRVSGM GLDAWCAQHI FRPLGMRDTA FRPSHRAIAR IAPTIVRNGR WLRGNVHDPT AAALGGVSGN AGLFSTADDL ALFARMLLNG GSLGGHQILQ PDSVALLLTP DGSTAVEATR TLGWEVQAPL IPNRYRAPRV GLVQHLGYTG TGLWIDLVTR RFVIVLTSRL YPDERGNAMP LREAVLNLVS STAPLLSGQQ IATRAPTMAD AVISAERRLP TAVGPVRTGI DVLEAGGFAL LVGRRVGLVT NHSGFDAQGR RTIDVLSQAP GVRLNAIFAP EHGIGTDLDA RFGDTIDPRS NVIVHSLYGN SNGMPRSALA DLDVLVFDLQ DAGVRFFTYL ATLGATLEAA AKAHIPVLVL DRPNPLGGDL VGGPVSDTAD RSLTNYVPLP LVHGMTIGEL ARLLNGELHI GAALHVVAME QYDRAMRFAN TGLGWVPPSP NLRDLSALER YPDVGLVEGA RVSVGRGTTA PFGMVGAPWM DGAALARELN ALDTGAIYTP VHFVPAEGPY HGRSCSGVAI HRVSALTRPG RIGLALARVL SQRYPEQFKL EAIRTSVGSE TVWAMLRDGI ALDAIERAYT AQADVFLSQR AAYLLY
|
| |