Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_1536 |
Symbol | |
ID | 6289489 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | + |
Start bp | 1628656 |
End bp | 1630242 |
Gene Length | 1587 bp |
Protein Length | 528 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642625101 |
Product | type II secretion system protein E |
Protein accession | YP_001899107 |
Protein GI | 187928620 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.151056 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTGGCTT TGGTTGAGCG GTTCAGGGCA TTCTCGCGCG TTGACGCGCA TGTCGAGCCA ATGCGGCTCC CGCCTGTTCC TGCCACGCTG ATGCAACACG TCGTGTGGGC GGGGGTCGGC GAGAAGATTC AGGTCGATGG CCGCTATGCA GGTGGTTCGG CCTTTCTCAC ATGGTTGGCT GACCTCAAAC GCCATGGTCT GGAGCCGGTT GTTGAATCTC TTGCCCCGCA GGAGCTGGCG CAAGCGCGCG AAAGCACGTC GGACGGGCAA TCGGGCGACG CATACCTTGA GTTTCTGGAA ATGTCGCGCC GGCGGCACGT CGAGGCTGCC GAACTGGGGG CGTCCGACCT TCACGTTCTG CAGCGAGAAG ACCATGCTGA ATTTCAGTTG CGCATTGACG GCGAGCTATG GACGGTGCCC GAGTGGGAAC TGAACGCTGC GCAGGGGGAA GCTTTTGTGC GAGCAACTTG CGTCGGCCTC GCAACCGTCA AAGAGCCGAC ATTCAATCCG CTCGAGTTCC AGGAAGCGCA GATCAGCGGC AACAAGCTGC CTGAGACCGA TATTGAAAGT GTTCGCATTA CGCGCGGCCC AGCCTATCCG ATCGAGGCCG GTGGTGGCGT CATGGTTAAT CGCCTGCAAC CGCGCAGGCA CACGGCCACA CTTCAGCGAC GCGAGACGCC GGCGAGTCGT CTGCGACTGG TGAGACCGGA GGCGCCGGCC GGCAAAGTCG ACTTTGAGCG GATGGGATTC ACGACGCTGC AGCTCGCGAT GTTCGAGCAG GTCGTCCTGA TGCCGGATGG TCTGTTTATT CAGACGGGGC CGACGGGAAG TGGCAAGACC ACGACCGGCT ACGAAATGCT GCGCTACAAG GGGCAGATTT CGCCCGAGCT GCGGCAGATC ACCCGTGAGC ATCCGGTCGA GTACCCGCGT GAATGGGCAG TGCAACTGCT TTCGACGGGG CAGAACTCCT CATACCTCGT CGAACGCATG CTCCGGATGG ACCCGGACAT CATCGACATC GGCGAGATCC GCACAGGCAA TGAAGGTGTT GCAGCAGTTC AGGCAGCGCA GACCGGGCAC TTGGTCTTCG GCTCGCTCCA CGTTCTTGAT CCGTTCGAAC TGATTGGTCG CCTGCAAATG CTCGACCACA CGCTGCTTTC CAAGGAGTTG ATGTGCAACC ACAAAATCAT CGCGGGTTTC ATGGGGCAGC GGATGGTTCC CGTGCTGTGC ACGGAGTGTC GGGAGCCATT GGCCAAACAT CTCGACGCAA TGCCGGGAAT TCTGCTCGAC CGCATCAAAA CCTGGGGAAA CATCGAACAG GTCCATGTGC GGGGAAAGGG ATGTCCGCAC TGCTTCGGCC GGCAAATCCG CGGGCGTGAG GCAGTTGCAG AGGTTGTCCT TAGCACCGAA GAGCTGATGG AAGACTTCCT CAGGGGGACG TCGTTGGCAC GTCGAAATCA CCGCCTGCGT GAGGGCTCCG ACAAATCCAT GCTCGGCAAT GTCATGGAAC GTGTGTTGGC CGGCAGGATC GATCCGCGCG ACGCGCAGAA GAACGTGCCC ATTGAGGCGT ATCGCGAGGG CGTATGA
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Protein sequence | MVALVERFRA FSRVDAHVEP MRLPPVPATL MQHVVWAGVG EKIQVDGRYA GGSAFLTWLA DLKRHGLEPV VESLAPQELA QARESTSDGQ SGDAYLEFLE MSRRRHVEAA ELGASDLHVL QREDHAEFQL RIDGELWTVP EWELNAAQGE AFVRATCVGL ATVKEPTFNP LEFQEAQISG NKLPETDIES VRITRGPAYP IEAGGGVMVN RLQPRRHTAT LQRRETPASR LRLVRPEAPA GKVDFERMGF TTLQLAMFEQ VVLMPDGLFI QTGPTGSGKT TTGYEMLRYK GQISPELRQI TREHPVEYPR EWAVQLLSTG QNSSYLVERM LRMDPDIIDI GEIRTGNEGV AAVQAAQTGH LVFGSLHVLD PFELIGRLQM LDHTLLSKEL MCNHKIIAGF MGQRMVPVLC TECREPLAKH LDAMPGILLD RIKTWGNIEQ VHVRGKGCPH CFGRQIRGRE AVAEVVLSTE ELMEDFLRGT SLARRNHRLR EGSDKSMLGN VMERVLAGRI DPRDAQKNVP IEAYREGV
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