| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1533 |
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| Symbol | |
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| ID | 6289506 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 1624985 |
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| End bp | 1626676 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642625098 |
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| Product | PilN |
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| Protein accession | YP_001899104 |
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| Protein GI | 187928617 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02520] type IVB pilus formation outer membrane protein, R64 PilN family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.261207 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGATCT TCTATCAACC GAAGCTGATC GCCGGTGCTG TGGCAACGGT CTTGAGTCTG
TCGGGATGCG GTATCGCGGA GGTGCGCGGC ATCCAGAAAG ACGCGATGCG CGACACGCGC
GCGCAGCTCG ACGCTGCCCC GAGCAGCCGC CCGGTCTTCC AGATCCATGA GGGGGCATGG
CTTCTTGGCG AGAAGGTCAA GGCGACCAAG CCGCAACCGG AACTCTTCAA CAAGCCCGTG
TCGTACAACG ACGCACGGGA CCGCATCAGT ACGCTTGCCG ACGTTGCCGA CTGGATTGCT
CGCACTTACA ACGTACGGGT GGTCATCGAT CCCTCGGTGA ATGCACCGTT CCCCTCGGCG
CAGTCCATTG TGACCACCGG CGCAACCGGC GCAGTCAAGG GGCCGCAACT ACCCGCAGGG
CTCGCCACGA GTCTTGCAGG CGCGCCCAAC GCAACGTTGG CCGCCCCAGG TGGCATGCAG
TCTGGGGCCG CAGCGATGCC GACGCAGTCA CCGCTGCACT ACGTTGGCGA TTTCAAGGGT
TTTATGCGGA CGAACGAGCA GCGCTACAAC GTCTACTCGC GCTTTCGCGA CGGCACCCTC
ACGTTCTTCC GAGTCGAGAC CCGGAACTTC ACGTTGCCTG ACATGGGAGC CTTCGCTTCC
ATGAGCGGGA CGATCTCCAG TGACGGCAAC CTGTCTTCCA GCTCGGGCGG CACGTCGGCT
TCTACCACTA GCTCCACATC TGGCGGTTCA AGCGGTTCGG GCACCGGCGG ACAAACAGCC
AGCCAGTCGT TGGAAGTGAA ACCGTGGAAA CGCTTGGAGG AGATCGCCAA GCAAATTGCG
GGGAATGGTG CGGAGGTCAT CGCCGACCCG AATCTGGGGA CTGTCACTGT CACCGGGACG
CCGCCACAGT GTGATCGTGT TGAGGACTGG GTCCGTACTC TTGATGCCAT GTTCGGTAAG
CAGGTCGCCA TCGACGTGCG CATCTACGAA GTCCGGCTCA ATCAAGAGGA CAACTACGGC
TTGAATCTCT CGCTCGGGTA CAAGAGCGGA AATGGGCACA CCGGTGCCAC GTTCACCGGG
GTGGCGCCGC CAACGGTGTC GAGCAACGCG ACACCCATGT CCGTCGGCGC GACGATTGTC
GGCGGCAAGC TGGACGGTAC CAAGGTGGCA GTGCAAGCGC TGTCGACGCT GGGCAACGTT
ACGCAGGTTG TGTCGCGTTC GGGAGTTACC CAAAACGGCA AGGTCATGGC AATGCAGTCT
GCAACTTTGC AGGACTACAT CCCGAGCTCG CAGACCACGT TGGCGTCGAA CGTGGGTTCC
ACGTCTTCCA TGCAAACCGC CCCTGACATC TCCGGCTTCA CAAGCACGTT CACGCCAAAG
GTTGTCAACG GCCGCATCTT GATCATGTTC GACATGACCC TGTCGAATCT GAACCCGCTA
CAAGAACAGA CCCAGGGCAG CGGGGCCTCC TTGTCCAAGG TGCAGCTGCG AACCAAGCCA
CTGGCACGTT TCCAGCAGAC CGTCGGCCTG AAGCCGGGCG AGTCGCTGGT ACTTACCGGC
TTGCGCGATC AAACGACCAG TACCACGAAC AACGGCGTTG GCTCGCCCTA CGTCCCAGTG
ACGGGCGGTG GGGTGGATGC CGCAAAGCGC GAAACGATGA TTGCCGTCGT TATCACCGCA
CGGCTTCTTT GA
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| Protein sequence | MRIFYQPKLI AGAVATVLSL SGCGIAEVRG IQKDAMRDTR AQLDAAPSSR PVFQIHEGAW
LLGEKVKATK PQPELFNKPV SYNDARDRIS TLADVADWIA RTYNVRVVID PSVNAPFPSA
QSIVTTGATG AVKGPQLPAG LATSLAGAPN ATLAAPGGMQ SGAAAMPTQS PLHYVGDFKG
FMRTNEQRYN VYSRFRDGTL TFFRVETRNF TLPDMGAFAS MSGTISSDGN LSSSSGGTSA
STTSSTSGGS SGSGTGGQTA SQSLEVKPWK RLEEIAKQIA GNGAEVIADP NLGTVTVTGT
PPQCDRVEDW VRTLDAMFGK QVAIDVRIYE VRLNQEDNYG LNLSLGYKSG NGHTGATFTG
VAPPTVSSNA TPMSVGATIV GGKLDGTKVA VQALSTLGNV TQVVSRSGVT QNGKVMAMQS
ATLQDYIPSS QTTLASNVGS TSSMQTAPDI SGFTSTFTPK VVNGRILIMF DMTLSNLNPL
QEQTQGSGAS LSKVQLRTKP LARFQQTVGL KPGESLVLTG LRDQTTSTTN NGVGSPYVPV
TGGGVDAAKR ETMIAVVITA RLL
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