Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_0058 |
Symbol | |
ID | 6289195 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | + |
Start bp | 70422 |
End bp | 72161 |
Gene Length | 1740 bp |
Protein Length | 579 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642623631 |
Product | RND efflux system, outer membrane lipoprotein, NodT family |
Protein accession | YP_001897655 |
Protein GI | 187927168 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGGACGC TGTGGATTCG ACGCGCTGAC GGTGGTGGTG CATCCCTTGT TTCGTCCCCT GCCGGGGCCG ACTTACTTTC TTTGTCTTGC CAAAGAAAGG TAAGCAAAGA AAGGCGCGCC CGAGATGGCG ACTTCCCCTT GAATTTATGT AACCGGGCGG AGACGGGGAA AACTCGCTCC GCTCAGACAG TTCCCCGTCT CTTTTCCGCC CGCTTACAGA AATTCAAGGC GCCATCTAGG GCAGGGTACG GCCAAACCGT CGGTGGGCAC CTGTTGGCGT TGGGGCGAGC GTTGAGGTGT GGTGAGCGGG CGGCTGGGGC TGTGTTGATT GCCGCGCTGG CTGTGAGCGG CTGTGCCGTC GGTCCCGATT TCAAAGCGCC CGCGGGGCCT GCGGCTACCG GCTATTCCGC GCAGCCTGTT TCGCGCGAAA CCGCATCCGC GCCCGTTGTT GGCGGCGAAG CGCAGCATCT CGTCGATGCC AACGTGCCGG CCGATTGGTG GCACCTGTTC CGATCCCCTG CGCTGGATGC GTTGGTGGAC GAGGCGTTGC GTGCGAGCCC GTCCGTCGCG CAGGCGGAGG CGCGCTTGCG TCAGGCGCAG GCCGAAGCGC AGGCGCAGTT CGGCTATGCG TTGCCGTCGG TGGATGGCAC CGTGTCGGCG GTGCGTCAGC AGATCAACCC AGAGGCGTTC GGATTCAACA CGCCCAAGCC AGGGCCGTTC ACGTTGTATT CGGCGTCGCT GTCGGTGTCG TATGCGCTGG ACATTTTTGG CGGCGTGCGC CGGGCGCTGG AGGCATCGCG CGCGCAGGTC GATACGCAGC GTTATGAACT GGAGGCGGCG CGCCTGTCTC TGGCAGGCAA TGTGGTGACG ACGGCGGTGC GGATTGCCGC GCTGGATGCG CAGATCGCGA CCACGCAGCG ATTGGCGGCC GAGCAGCGCA AGCAATTGGA GATCACCGAG CGGAGGTTGA GCGTGGGCGG CGTCGCGCAG GTCGATGCGT TCTCGCAGCG CACGCTCGTC GCGCAGACCG ACGCCACGTT GCCGCCGCTC GCGCAACAGG CTGCGCAGCA GCGGCACCGT CTATCGGTAT TGCTGGGCCG CGAACCCGGT GCCGGGTTGC CTGACCTGCC GTCGCTCGAC GCGCTGCATC TGCCCGACCC GCTGCCGGTG TCGCTGCCAT CCACGCTCGC GCAGCGCCGC CCCGACATCC GTGCTGCCGA AGCGATGTGG CACGAAGCCA GCGCCAACGT GGGCGTGGCT ACGGCCAATT TGTTCCCGCG TATCACCCTG TCCGCCGGGC TGGGTTCGGA AGCCACCAGC TTCCGCAACC TCCTTGGCGC TGGGTCAAGC ATCTGGAATC TGGGCGCCGG CCTCACGCAA CCGCTCTTCC ACGGCGGCAC TCTGCGCGCA AAAAAACGCG AAGCCGAAGC GGCCTACGAC GCTGCCGGCG CCGCCTACAA ACAAGCCGTA TTGCAAGGGT TGCAAGAAGT GGCCGACACC CTGCACGCCG TCAACAACGA CGCCCAAACG CTGCAGGCCC GAGCGCTGGC AACCGACCAG GCACAACAGA CCCTGCGCGC CGCCCAAGCC CGCCACGCCG CCGGCGGCAT CAGCACGCTA ACGTTGCTGG ACGCCCAGCG CCAGGTCGAC CAGGCCACAC TGCAACAGGT GCAGAGCCAG GCGGATCGGT TGCTGGATTC CGCCGCGCTC ATGCAGGCGT TGGGTGGCGG TTGGCAATAA
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Protein sequence | MWTLWIRRAD GGGASLVSSP AGADLLSLSC QRKVSKERRA RDGDFPLNLC NRAETGKTRS AQTVPRLFSA RLQKFKAPSR AGYGQTVGGH LLALGRALRC GERAAGAVLI AALAVSGCAV GPDFKAPAGP AATGYSAQPV SRETASAPVV GGEAQHLVDA NVPADWWHLF RSPALDALVD EALRASPSVA QAEARLRQAQ AEAQAQFGYA LPSVDGTVSA VRQQINPEAF GFNTPKPGPF TLYSASLSVS YALDIFGGVR RALEASRAQV DTQRYELEAA RLSLAGNVVT TAVRIAALDA QIATTQRLAA EQRKQLEITE RRLSVGGVAQ VDAFSQRTLV AQTDATLPPL AQQAAQQRHR LSVLLGREPG AGLPDLPSLD ALHLPDPLPV SLPSTLAQRR PDIRAAEAMW HEASANVGVA TANLFPRITL SAGLGSEATS FRNLLGAGSS IWNLGAGLTQ PLFHGGTLRA KKREAEAAYD AAGAAYKQAV LQGLQEVADT LHAVNNDAQT LQARALATDQ AQQTLRAAQA RHAAGGISTL TLLDAQRQVD QATLQQVQSQ ADRLLDSAAL MQALGGGWQ
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