| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_5172 |
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| Symbol | |
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| ID | 8007752 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012849 |
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| Strand | + |
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| Start bp | 68967 |
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| End bp | 71081 |
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| Gene Length | 2115 bp |
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| Protein Length | 704 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644822384 |
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| Product | integrase family protein |
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| Protein accession | YP_002973644 |
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| Protein GI | 241114169 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.301594 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCCGC TCGACCCCGA CCACAACCCT GAACCACCCC CCAGCCTCGA GACGCTGCAA
AGTGAAATAA AGCGCACTCG ACCCACCCGC CGCCGCGTTG TCGTTCGACG CCACCTCCAC
CGTGGCCATT TCGCGTTCCT GCGCGCGGTC GTCCAGGGGC TGGATGCCCG GCCGATGTGG
GCGCGCTACC TGGCCATCGA TGGCGAACTG GAGGCGCAGG CCGAGCTGAC GCAGGAGACC
TTCGTCGCGC ACCCGAAGGT ACGGCGCATG ACCGCCTGGC TGCGCGCTGA ACTGGCGGCG
GCCGTGCGCC GCGCCGGCCA CTACGGCAAG GTGCGCCTGA TCCGCATCGA CCTCTCCGGC
CTTGCGCAGC GCGGACCCGC GTTGCCAGCG CTGGAGGAGT TCGCGCTGGA GAACGGGCTG
GATGACTTCA GCATCGAGGA GCAGCTCGAA GCCTATCGGG AGCGCTTCGG AGACGCGGTG
CAGCGGGCCG AGCGCCGGAC CAAGCTGATG GAGCGGCAGC TGCGCCTGCT GGCCGACCTG
GAACAGGTGC TGGCGGAGCC GGTGCGGGTC GACGACCACT GCCACGCGTG GCTGGCCGCG
GGCGTCGCGG ATCGGCTGGA GGCCGCCGGC GTAGCCACCA TCGGCACCCT GATCGACCGT
ATCAACAGCC TGGGCGGCGG CTGGTTCCGC GCGCTGCGCG GGGTCGGCGA GAAGAAAGCC
CACGCCATCG AGCGCTTCCT GCGCGCGAAC GCCGACACGC TGGCGCGCAA ACTGGGCGAA
CACGCCCGGA TCCCGCGCCG GCAACTCACC GCGCACGAGC GTGACCGCGT GGTGGCATCC
GGCACTGGCC TCCTGCCCCT GGAAAAGATC GTTGTGCCGG CCGCGCTCGA CGGCAGTAAC
GGCCGTTTCC GGCGGCCCCC GGTCGAGTGC CTGCTGGACG CCCAGAACGA CTACGAGGCG
GTACTCACCT GGCTGCGCTC GAAACCGGGG CTGCCGCCTG CCGAGATCGC CCGGCGGCGC
ACCGGCCGGC GCGATGTCAT CACCGAGCCC GGCCCGCTGG ATTGGCTGCA CTACCTGTCC
AACACCCAGC GCAGTTATCG CAAGGAGGCA GAACGCTTTC TGCTGTGGGC CATCTGGATT
CGGCGCAAGC CGCTCTCGTC GATGACGACT GAGGACTGCG TCGCCTACCG CGATTTCCTG
GCCGACGTGC CCGACGACTG GTGTGCGCCA CGCTCTCGGG AACGGTGGAC GCCGAGCTGG
AAACCGTTCG AGGGCAAGCT GTCGCCCGAG TCGCAGGCCT ATGCCCTGAC CGTGCTGCAG
AACCTGTACC GGTACCTCAA CGACAAGAAC TATCTGAGCG GCAATCCGTG GGGCGGCGTG
CGGGCGACGA ATGGTGGCAA ACCACAGCTG GACGTTGGGC GCAGTCTGAC CGAGGACCAA
TGGGCGTTTG TGGTGGAGCG CCTGTTCCTG CTGGAGCGCA CGTCATCGAA CCTGCGGCTG
CAGGTCGCCT TGCCCTTGCT CTACGCCACG GGCTTGCGTC TCGCGGAGAT CGTGGGAGCG
ACAACGGCCG ACCTGGCATG GCGCAGTCTC GCCCTCCCCC GCTCCGGCGA ACGCATGGAC
GGCTGGTGGC TGACCGTGGT CGGCAAGGGG TCGCGTGTAC GTGAGGTGCC AGTGCCCGAT
GAGGTCGTGC ACGCGCTGGG CGCGTACCTG GACTCCCGCG GCTTCCCCAG CGACCCCGCC
CAGATTCGTG AGCCGGTGGC CCTGCTCGGC CACGCGACCG ATCAGGCTGA GCGTGCGCCG
TGGGCAAAGC GGGACACGGC GAGCCCTGCC GCTCCGCTGA CGCCGGGTGT GCTCTACCGG
CAGATCAAGC GCTTCTTCCA GGCCTGCGCA ACCGAGTTGG AGGCAACCGA TCCGCAGGGA
GCAGCACGGC TGAACGAAGC CAGCACGCAC TGGCTGCGAC ACTCACACGC ATCACATGCC
ATTGCCGCCG GCACGCCGGT CGAGATCATG CAGCAGAACC TGGGGCACAA GTCGCTCGAC
ACCACGACGG TCTACGTGAC GTCGGAAGAG GCCATTCGGA TGAAGGAGCT GCGGGGGTTT
TGGAAGCGTT CGTGA
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| Protein sequence | MDPLDPDHNP EPPPSLETLQ SEIKRTRPTR RRVVVRRHLH RGHFAFLRAV VQGLDARPMW
ARYLAIDGEL EAQAELTQET FVAHPKVRRM TAWLRAELAA AVRRAGHYGK VRLIRIDLSG
LAQRGPALPA LEEFALENGL DDFSIEEQLE AYRERFGDAV QRAERRTKLM ERQLRLLADL
EQVLAEPVRV DDHCHAWLAA GVADRLEAAG VATIGTLIDR INSLGGGWFR ALRGVGEKKA
HAIERFLRAN ADTLARKLGE HARIPRRQLT AHERDRVVAS GTGLLPLEKI VVPAALDGSN
GRFRRPPVEC LLDAQNDYEA VLTWLRSKPG LPPAEIARRR TGRRDVITEP GPLDWLHYLS
NTQRSYRKEA ERFLLWAIWI RRKPLSSMTT EDCVAYRDFL ADVPDDWCAP RSRERWTPSW
KPFEGKLSPE SQAYALTVLQ NLYRYLNDKN YLSGNPWGGV RATNGGKPQL DVGRSLTEDQ
WAFVVERLFL LERTSSNLRL QVALPLLYAT GLRLAEIVGA TTADLAWRSL ALPRSGERMD
GWWLTVVGKG SRVREVPVPD EVVHALGAYL DSRGFPSDPA QIREPVALLG HATDQAERAP
WAKRDTASPA APLTPGVLYR QIKRFFQACA TELEATDPQG AARLNEASTH WLRHSHASHA
IAAGTPVEIM QQNLGHKSLD TTTVYVTSEE AIRMKELRGF WKRS
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