| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4762 |
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| Symbol | |
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| ID | 8017474 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012855 |
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| Strand | + |
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| Start bp | 107596 |
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| End bp | 109521 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644828451 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_002979651 |
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| Protein GI | 241589626 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.228994 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.63689 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAATC GAATTCTCAA GAGGGGTGAG GCCAACGGCA ACCTCACTGA ACCGACCGTT
GTCAATCCCG TAGAAGTCGT CTCGGCTGGT GGCTGGGTTC CACCATCTTC CTTGGGTGAC
AATCTTTCTG GCGCGGCATC AGTTGATACT GACAGAGCCG GCGAAGCGCC GGCCCCCGGT
GGACATCGGG AAGTTGATGG TGACGACTCG GTAGTCATCT CCACCGTCGA CGCGCTTCCA
CTCTTTACGC GCAAGATGTA TGACGACGAT CTTGTCCAGA TGCCGCCGTC AATGCGTCAG
TGTGTATGCC CAGTTGAGGT GTCGCCGCCA AATGCCGACG GCAAGAAGCG GGGCGAGTAC
GCGATCATCT TGACGAAGGA CATGCGCAAT GACGACTACG TCGATGAGCT AGTTAGGCAC
CTGGCGGTCA AATGGGACCT TGTCGCCGAT GGCTATCACA TTGCGTCTGA CCAGGTACTG
ATTGATCTTG CCCGTGATCG CGTGATGGAG AATCGCAGGC GTAAGGCGGC CGCTGTGTCG
CTTGAGCAGA AGAATGCGAG CGCTCTGTAC CGGCAGTTCG AACTGATGGG CGAGTTCTCG
ATTGCAAACG AGGTCTCGGA TTTGCACATT GAGATGAATC GCCGTCAGCC GAAATCCCAA
GTCTCGTTCC GAATTCATGG CAAGTTGGTC CAGCCGCCCG AGTTCTGGAT CGATACGCAC
ACCCTGCTCG ACATGGTTGC GTACTTGTAC AACAACAAGT CGCAAAACGG CTCTCACAAC
TCGTACAACG AGAACATCCT TCAGCAATGC CAGTTGCAGC TGAAAATCAA TGGCCGCGAG
GTACTGTTTC GATGGGCATC CGGCAGAACA GCGCTCGGTA GCATTGTGGT GCTTCGTATG
CTGTTCCAGG ATGACATGCA GAGCATCAAG TCTCTGGAGG AGCTCGGCTA CTTCCAACAG
CAGATTCACA TGTGGCGGAA CGCAATCAGC CGGCACAAAG GTGGCATTAC GGTCGCGGGT
ATTGTGGGCT CGGGAAAATC GACCACCATG CAGACCAACA TGGCTGGCCT GCCCGCGACG
ATGGCCAAAT ACACGGTCGA GGATCCGGTC GAATATCTGA TTCCCGGTGT TCGCCAGTTC
AACGTCTCGC GCTCTCTGAC TGATACAGAG GGGGACTCGT TCATCGGTTG GAAGCGACAG
CTGAAGCGTA TGGACCCGAG TGCCGTCCTT GTGGGCGAGT GTCGCGATTT GGAAAGCGCT
TCGATGTTTC GTGACATTGT CGAATCTGGG CACCTTGGAT TCACCACTGT TCACGCGCCG
TCCCACATTG GCAGCATCGA TCGATTTTGC TCGTCCGAAT TGGGGATCCC CCGTGAAGTC
ATGGCGACTC CGGGCTTCAT GAATCTGCTG GTCTATCAGG CGCTCGTGCC AATCAATTGT
GAGTGTTGTG AAGAATTTCC AGCTCGTAGG ATTGCAAGTT CGGACTACTT GAACCGTCTT
GAAAGGCTAT TTGATATCGA TGTCGACGGC ATTTATCTGA CGAATCTCAA CGGGTGCCCG
AAGTGCCGCA AGCCAGGACT AACAGAGCTC AATGGTATTG CGGGGCGGAA GGTGGTCGCC
GAGATGCTGG AGCTGGATAC GTACATGCTC GAGATGATTC GCGACCACAG GAACATCGAT
CTGATTAAGT ACGTTAACAA GCAGCGAACC GCGGGCTTCG ATGAGGAGGA TTCTGTAGGC
AAGTCAGCCA TGGAAGTGGC AATGTATCGC TGCTCGCGCG GCGAAGTGTC GCCCTTCGAG
ATCGAAGAGA AGTTTGGCAC TTTCGAGCAG TATGAGAGCG AACAGCAGCG CTTTGGTCTT
GGCAAATTCC GTGAAGCGCC CGAACGGTTC GGCAACGTAC CAAGGGACTG GGAGGCTGTC
GCATGA
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| Protein sequence | MLNRILKRGE ANGNLTEPTV VNPVEVVSAG GWVPPSSLGD NLSGAASVDT DRAGEAPAPG
GHREVDGDDS VVISTVDALP LFTRKMYDDD LVQMPPSMRQ CVCPVEVSPP NADGKKRGEY
AIILTKDMRN DDYVDELVRH LAVKWDLVAD GYHIASDQVL IDLARDRVME NRRRKAAAVS
LEQKNASALY RQFELMGEFS IANEVSDLHI EMNRRQPKSQ VSFRIHGKLV QPPEFWIDTH
TLLDMVAYLY NNKSQNGSHN SYNENILQQC QLQLKINGRE VLFRWASGRT ALGSIVVLRM
LFQDDMQSIK SLEELGYFQQ QIHMWRNAIS RHKGGITVAG IVGSGKSTTM QTNMAGLPAT
MAKYTVEDPV EYLIPGVRQF NVSRSLTDTE GDSFIGWKRQ LKRMDPSAVL VGECRDLESA
SMFRDIVESG HLGFTTVHAP SHIGSIDRFC SSELGIPREV MATPGFMNLL VYQALVPINC
ECCEEFPARR IASSDYLNRL ERLFDIDVDG IYLTNLNGCP KCRKPGLTEL NGIAGRKVVA
EMLELDTYML EMIRDHRNID LIKYVNKQRT AGFDEEDSVG KSAMEVAMYR CSRGEVSPFE
IEEKFGTFEQ YESEQQRFGL GKFREAPERF GNVPRDWEAV A
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