Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_4333 |
Symbol | |
ID | 8022021 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | - |
Start bp | 948385 |
End bp | 949917 |
Gene Length | 1533 bp |
Protein Length | 510 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644833108 |
Product | RND efflux system, outer membrane lipoprotein, NodT family |
Protein accession | YP_002984248 |
Protein GI | 241665889 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0379784 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.0805194 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGCGG GCCGCTGGAC TCCGCTGGCG CTGGCCGCCG CGCTGTTCCT CGCGGCCTGC TCGCTCGCCC CGACCTACGA GAAGCCGGAC GTTGGCACGC CCAACGCCTT CAAGGAAGCT GCGCAGCCTG CGCAGGCGAC CGATGCACCG CTGGCGGCAA ACGAGCAAGG CAAGTGGAAA ACCGCCGAGC CCGCCCTGCC CGCCGATGGC GCGTGGTGGA AGATCTTCAA CGACCCGACG CTCGACAAGC TCGAAGCGCA GGCCGCTGAA GCCAGCCCCA CGCTGGCCGC CGCCGCCGCC CGCGTGACGC AGGCGCGCGC CTTCGTGCAG GCCAACCGTG CATCGCTGTT CCCGGAACTG GACGTGGGCT TCGGCCCGAC GCGCCAGCGG GCGTCGGCGG CATCGGCCGG CTTGCCGGTC GGCGCGCCCG TGCAGCCGCA GACGTACTGG CGCGCGCAGT CCACCGTGGC GTATGAGGTC GACCTGTTCG GCCGCGTGCG CAACAACATC GATGCCGCCG GTGCCGACGC CGAGCGCGTC GAGGCGCTGT ACCGTGCCGC ACGGCTGACC TTGCAGGCCG ACGTGGCGCA GACGTATTTC AGCCTGCGCA CGCTGGACGC GGAAGAAGCC TTGCTGTCCC GCACGCTGGT CGGCCGTGAA GAGGCGCTCA AGCTCGTGCA GCGCCGCTTC AACACCGGCG ACATCGGCGA GCTGGACGTC GCCCGCGCTG ATGCCGAACT GGCCACGGCA CGCTCCGACC GCATCGGCGT ACAGCGCCGT CGCGCGGTGC TCGAGCACGC ACTGGCAACG CTGCTGGGCA AGGCACCGGC CGATTTCACG ATGGGCGCAG ACCCGCTGCA ATCGGCCGAA GTGCGCGTAC CGGCGGGCCT GCCCTCCGCC CTGCTGGAAC GCCGCCCCGA CGTGGCCGCT GCCGAACGCT CGATGGCGGC TGCAAACGCA CGCATTGGCG TGGCGCGCGC GGCGTTCTTC CCGCAACTGC AGCTCACGGG CGGCTTCGGC TACGAGTCGC ACGACATCGG CGACCTGCTC AAGTGGGGCA GCCGCACGTG GATTCTCGGC CCGCTGGTCG GCACCGCGCT GTCGCTGCCG ATCTTCGACG GTGGCGCCCG CAGCGCCGGC GTGAAGCAGG CCCGTGCCGC GTATGAAGAG AACGTCGCCA ACTACCGCGA AAGCGTGCTC GTCGCCTTCC GCGAGGTGGA AGACAACCTC TCGGAACTGC GTCTGCTGGC CGATCAGGCC AAGGCACAGG ACGACGCCGT GCGCGCTTCC ACGCGCGCCG CGCAACTCTC GCGCACGCGC TACAACGCGG GGTCGGTCAA CTACCTGGAC GTGATCGATG CCGAGCGCAA CATGCTGTCC GCCGAACGCA TCGGCGTGCA GCTGGCCGGC AGCCGCGTGA ACTCCACGGT GGGGCTCATC AAGGCGCTGG GCGGTGGCTG GGGGGATCTG CCGCCGGCTG CACCGGCTAA CGCAGCCACC GCGGCCCAGC CCGCAACGGT GGCGCAACAG TAA
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Protein sequence | MRAGRWTPLA LAAALFLAAC SLAPTYEKPD VGTPNAFKEA AQPAQATDAP LAANEQGKWK TAEPALPADG AWWKIFNDPT LDKLEAQAAE ASPTLAAAAA RVTQARAFVQ ANRASLFPEL DVGFGPTRQR ASAASAGLPV GAPVQPQTYW RAQSTVAYEV DLFGRVRNNI DAAGADAERV EALYRAARLT LQADVAQTYF SLRTLDAEEA LLSRTLVGRE EALKLVQRRF NTGDIGELDV ARADAELATA RSDRIGVQRR RAVLEHALAT LLGKAPADFT MGADPLQSAE VRVPAGLPSA LLERRPDVAA AERSMAAANA RIGVARAAFF PQLQLTGGFG YESHDIGDLL KWGSRTWILG PLVGTALSLP IFDGGARSAG VKQARAAYEE NVANYRESVL VAFREVEDNL SELRLLADQA KAQDDAVRAS TRAAQLSRTR YNAGSVNYLD VIDAERNMLS AERIGVQLAG SRVNSTVGLI KALGGGWGDL PPAAPANAAT AAQPATVAQQ
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