| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4281 |
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| Symbol | |
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| ID | 8021969 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012857 |
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| Strand | + |
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| Start bp | 883109 |
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| End bp | 884476 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644833056 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_002984196 |
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| Protein GI | 241665837 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family
[TIGR01167] LPXTG-motif cell wall anchor domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.711709 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGCGC CTGCTGCTCG CCCGTTGTGG CGAACATTCA TTGCATTCCT CGGCCCGCTG
ATCCTGGCCA ACATCCTGCA ATCGTTGTCG GGCACGCTCA ACAACGTCTA TGTGGGCCAC
ATGCTGGGCG TGAAGGCGCT GGCTGCGGTG TCAGCGTTCT TCCCGATCCT GTTCTTCTTC
ATCGCCTTCA TCATCGGGCT GGGGTCGGGA GCGGCGGTGT TGATCGGGCA GGCGTGGGGC
GCCAAGAAGC CCGAGGCGGT CAAGACCGTT GCGGGCACCA CGCTCTCCGT GGGTTTCATC
GTGGGCCTGG CGGTGGCGCT GCTGGGAGGC CCGTTCGCAA ACGCGCTGCT GGGTTGGCTC
GGCACGCCGG CCGATATCCT GCAGGACGCC ACGCTCTACG CCAGCGTCAT GCTCTATGCC
ATGCCGGGCC TGTTCGTCTA CCTGCTTGCC ACGGCGATGA TGCGCGGCGT GGGCGATACG
CGCACGCCGC TGCGCACCCT CGCGCTGTCG ACGTCGATCG GGCTGGTGCT GACGCCGACC
TTCATTCGCG GCTGGTTCGG CCTGCCGCAA CTGGGCGTGG CAAGCGGCGC CGCGGCGACC
ATCATTTCGT TCACGATCGC GCTGGTGTGG CTCGCATTCT TCCTGCGCCG CCGCAACCAT
CCGCTCGCGC CCGATGCCGT GCTGGCCCGG CACTTGTGGG TCGATTTTGG TGTGCTCAAG
ACCGTGCTGA AGATCGGTGT GCCGACGGGC TTGCAGCTTG TGGTCATCTC GATTGCCGAG
CTGGCGCTGC TGTCATTCGT CAACGGCTTC GGCTCCGACG CGACGGCCGC CTACGGCGCC
GGCACGCAGA TCATCAGCTA CGTGCAGTTT CCCGCCATGT CGATTGCGAT CACGGCGTCC
ATCCTCGGTG CGCAAGCCAT CGGCTCGGGC AATACGGAGC GGCTCGATGC CATCACGCGC
ACCGGGCTGT GGCTCAACGT TGCGATTACC GGTGTGCTGG TGCTGATGGC GTTGCTGTTT
TCGCGCGCGG TCATCGGCTG GTTCACCACC AGCGCAGAAG TGATGAGCCT TGCCCAGAGC
CTGCTGCATA TCTCGCTGTG GAGTTCGGTC ATCTTTGGCA TGGCGAGCGT CTTCTCGGGC
GTGATGCGCT CAAGCGGCAC GGTGATGGCG CCCACGGCCA TTTCCATCCT CGCCATCGCG
GCGGTGGAAG TGCCGGTGGC CTGGGTGCTG AGCCGGCATA TCGGCACCGA CGGCATCTGG
GCTGCATATC CGGCCGCCTT CCTTGCCATG TTCGTGATGC AGGGGCTGTA CTACGCGCTC
GTGTGGCGCC GCCGCGCGCA GCGGTTCGGT ATCCGCCGCA TGGTTTGA
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| Protein sequence | MTAPAARPLW RTFIAFLGPL ILANILQSLS GTLNNVYVGH MLGVKALAAV SAFFPILFFF
IAFIIGLGSG AAVLIGQAWG AKKPEAVKTV AGTTLSVGFI VGLAVALLGG PFANALLGWL
GTPADILQDA TLYASVMLYA MPGLFVYLLA TAMMRGVGDT RTPLRTLALS TSIGLVLTPT
FIRGWFGLPQ LGVASGAAAT IISFTIALVW LAFFLRRRNH PLAPDAVLAR HLWVDFGVLK
TVLKIGVPTG LQLVVISIAE LALLSFVNGF GSDATAAYGA GTQIISYVQF PAMSIAITAS
ILGAQAIGSG NTERLDAITR TGLWLNVAIT GVLVLMALLF SRAVIGWFTT SAEVMSLAQS
LLHISLWSSV IFGMASVFSG VMRSSGTVMA PTAISILAIA AVEVPVAWVL SRHIGTDGIW
AAYPAAFLAM FVMQGLYYAL VWRRRAQRFG IRRMV
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