Gene Rpic12D_3906 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_3906 
Symbol 
ID8021593 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012857 
Strand
Start bp482286 
End bp483446 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content63% 
IMG OID644832694 
ProductExtracellular ligand-binding receptor 
Protein accessionYP_002983835 
Protein GI241665476 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAAAGA CGATCAAACG GCTGCTGGTG ACGGCGGCGG CTGCGGGGGC GGCTATCGCA 
ACGGGCACGA CGTTCGCGGC CCAGGACATC AAGATCGGCG TGGCCGAGGC GCTGTCGGGC
GGTGCAGCCC AGTACGGCGT GGCCATCCGC AACGGCTTCC AGCTGGCCGC TGATGAGATC
AATGCCGCGG GCGGCATCAA CGGCAGCAAG ATCGCGCTGG TGATCGAAGA CGAGCAGGGC
AAGAAGGAAG AGGCCATCAA CGTTTTCAAG AAGCTGATCT TCCAGGACAA GGTCGCCATG
GTGTTCGGCC CCACGCTGTC CAACTCGGCA CAGGCAGCGG ACCCGATTGC GCAGGGCGCC
AAGACGGTCG TGTTCGGCAC CTCCAACACC GCTGACGGCG TCACCAGCAT CGGCGATTTC
GTCTTCCGCA ACTCCGTGAC CGAAGCCGAC GTGCTGCCGG CCACCATCCA GACTGTCGTG
AAGAAGGCGG GCGTGAAGAA GGTCGCGGTG CTGTACGGCA ACGACGACGT CTTCACCAAG
AGCGGCTACG ACAACTTCAA GAAGGCGCTC GAAGACCTGA AGATTCCGGT CACGACCACC
GAGACCTTCG CCAAGGGCGA CGTGGACTTC AAGGCCCAGC TCACCAAGAT CAAGGCGACG
AATCCGGATG CGATCGTGCT GTCGGCCCTG ATTGCGGAGG GTGGCCCGAT CATGGTGCAG
GCGCGTCAGC TTGGCCTGAA CGTGCCCATC ATCGGCGGCA ATGGCATGAA CTCGGTCAAG
GTGTTCGACC TGGCCAAGGA CAAGTCCGAC AACCTGTGGG TGGGCAGCCC GTGGTCGATC
GAGAACCACA CGGCCGAGAA CAGCAAGTTC ATCACCGCCT ACACCGCCAA GTACAAGGCA
GCGCCGGACC AGTTCGCCGC GCAGGCGTAT GACGCCATGT ACATCGCGAG CAAGGCGCTG
AAGACGGTCA AGTTCAGCGG CAAGCTGGAA GCCGACCGCA AGGCGATCCG CGATGCGCTG
CCGGGCGTCA AGCACATCGG CGCAACCGGC GCGTTCGCAT TCCGCCAGGT GACGGCGCGC
GGCAAGCCGG CTGGCTACGA CGCTGTGCAG ACGCCGATCG TGAGCGTGAC CAAGAACGGC
AAGTACACGA TCGAGAAGTA A
 
Protein sequence
MQKTIKRLLV TAAAAGAAIA TGTTFAAQDI KIGVAEALSG GAAQYGVAIR NGFQLAADEI 
NAAGGINGSK IALVIEDEQG KKEEAINVFK KLIFQDKVAM VFGPTLSNSA QAADPIAQGA
KTVVFGTSNT ADGVTSIGDF VFRNSVTEAD VLPATIQTVV KKAGVKKVAV LYGNDDVFTK
SGYDNFKKAL EDLKIPVTTT ETFAKGDVDF KAQLTKIKAT NPDAIVLSAL IAEGGPIMVQ
ARQLGLNVPI IGGNGMNSVK VFDLAKDKSD NLWVGSPWSI ENHTAENSKF ITAYTAKYKA
APDQFAAQAY DAMYIASKAL KTVKFSGKLE ADRKAIRDAL PGVKHIGATG AFAFRQVTAR
GKPAGYDAVQ TPIVSVTKNG KYTIEK