| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2672 |
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| Symbol | |
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| ID | 8020337 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 2822604 |
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| End bp | 2827916 |
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| Gene Length | 5313 bp |
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| Protein Length | 1770 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644831453 |
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| Product | DEAD/DEAH box helicase domain protein |
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| Protein accession | YP_002982615 |
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| Protein GI | 241664255 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.47983 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGTCT TTGAGTTCCG GGGGAAACTC GTCTCCGACT ACGCGACGTT TACGCGTAGC
TTCACCCGTA TTCGAGCAAC GGATATCAAG TCATTCGTCG ATGCGGCCTA CGACTCCGAG
CGCTATTGGC CCGCACCGCT CATCCAAGTC AATCCCAATT TCAAGGTGGG GTCGAATGTC
GAGACCCTAG TTAAGGATGG CGGGCTGCAC GCGGAGTGCG CTCGCATTTT CCGCGCTGGC
AAGTCGGCCT CCAATGCAGG CGTGCCGCTG ACGCTCTTCA AGCATCAGGA AGAGGCCATC
AGCTTTGCGC AGAGTGGTGA GAGCTATGTC CTGACGACCG GTACTGGTTC GGGCAAGTCC
CTGGCGTATT TCATCCCGGT TATCGATGCC ATCTTGAAAG CCAAGGCGTC CGACAACACG
CCGCGCACGC GGGCCATTGT CATCTATCCG ATGAACGCGC TGGCCAACAG CCAGTTAGAA
GAGCTTGGCA AGTTCTTGGC GGACTATGGA GACCATGCGC CGGTGACCTA TGGGCGCTAT
ACCGGGCAGG AGGACGACGA GGAGCGCCAG CGGCTCGCGT CGAATCCCCC GGATATTCTC
TTGACCAACT TCATGATGCT CGAGCTCCTG ATGACCCGTC AGGACGATAC GGACAAAGCC
GTTATTCGCA ACGCCAAGGG GTTGCGATTT CTGGTTCTGG ACGAGCTGCA CACCTATCGC
GGTCGGCAGG GGGCTGATGT GGCCTTGCTC GTGCGCCGTG TTCGCGAGGC GCTCGCTGAC
GAGCTGCAGT GCATTGGGAC TTCGGCAACC ATGGCCACCG AAGGCACCGA GCAGAAGAAG
AACGAAAAGG TTGCCGAGGT TGCGGGCCGT TTGTTCGGCA CGAGCATCAC CGCCGCCAAT
GTCATCACTG AGACGCTACA GCGAGTGACA CCCGAGCACG TGCTCGTTGA GCACATCAGG
TCAAGTCTCA AAGAGGCGAT TCAGGCAGGG CTGCCTTCGG CACCATCATT CGCGGAATTG
GCCGAGCACC CTCTGGCCAT CTGGGTGGAG TTAAATCTTG GACTGGTGCG CAATGAGGGG
AAGTGGCGAC GGGCACGCCC TGTCACGCTA GCTGATGCGG GCAAGCACCT GGCTGTCGAC
GCAGGCATCG ACGAGGGATT GGCACGAACC ACACTCACCG ATTTTCTGCT TCTCGCATAC
ACGACCACCG ATAAGCCCCT CGTTGAGGGC GGCCGCAGCC TATTTGCCTT CAAACTGCAT
CAGTTCATTT CCGGGGGCAG CAATGTCTAT GGCACGCTGG AACCAGAAGA CCGACGATTC
CTGACTCTAG AAGGTAGTCA ATATGTTCCG GGCGAGCGTG AGCGCAGGCT CTTCGCGTTG
CATTTCTGTC GCGAATGCGG ACAGGAGTAC GCCCCCGTCT GGGACGAGAG TGTCGCTGGC
GGCCGCATCT TCAATCCGAG AAGCATTGAA GAACGTACGC ACGAAGATGA GGATATCAAG
AGCGGCTACT TCATGCCGGA TACCACGGGC ATCTGGGACG ACACCCTAGA CCGCTACCCT
GAGACTTGGC TGGAACAGAA GAAAGATGGC GACCTAAAGC TCAAGTCGAA CTATCGGAAG
CGTCAGCCTC AACCTGTGCG CGTCGATGCG ACGGGGCAGC ATGTGGCAGA CGGCACACCA
GGTTGGTACA TTCCCGGAAG CTTTGGGTTT TGCCTTAACT GCGGCGTCGT GCATCAGACG
GCTGGCAAGG AGTCGCTGCG TCTCACCGGT TTGTCTGGTG AAGGACGTAG CTCGGCCACA
ACGATGCTCA CCCTCTCGGC TCTGCGTTAC CTCTATGAAG AGGACGCGCA GCTCAAGGAT
GAGGCCAAGA AGGTTCTCGG CTTCACAGAC AATCGACAGG ACGCTGCTCT TCAGGTCGGG
CATTTCAATG ATTTTCTGCA GGTCCTTCTA CAGCGTGCTG CACTCCTCGC TGCGGTCGAG
CAGTCGGGTG GGCGGCTCAA CGAAGGTGAA ATTTCCCATG CTGTGTTTAG TGCGCTCGGT
TTCGACAGGG ATGAGCCTGG CGTGCGCGCC GAGTACATGC AGGAGCCGGA GGTCAAGGGC
AACGCGCGTC GGCAGGTCCA AGACGTCATG CGGGCCATTT TCGGCTATCG GGTCTATTTC
GACCTGCGGC GAGGTTGGCG TTTCAATAAC CCCAACCTAG AGCAACTCGG TCTTGTCCAT
ATTGAGTACC AGGACATTGA TAAACTGGCT GCAGACGTCA GCGAGTGGGC CGATGCGCCA
TTGATATTGC AAGCGGCGTC TGCCGCCGTG CGCAAACGCC TGCTCACGCT GCTCTTTGAT
GCGATGCGGC AGGGCTTATG CCTTGCTTCG CGATTTTTGG ACCGCACCGA GCTGGACAAA
CTCAAGACTG CCAGCTTCGC GAATCTTCGC GAGCCGTGGG GATTTACCGA GGATGAGGCG
CCCGTTGCGG CGAATTGGTT CATCACGACT GGGCGGCCAA GGGACGAGGA CCGGCGGAAT
ATTGAATATC TCGTGTCGGG TAGCGCCCGT TCCAAGCTGG GTAAGGACAT CAAGCGAGCC
AGCACTTGGC AGGAGGTGGA CCAGGATGGC ACCAAGCGAG ACAATCCACA CGCCGTCAAA
ATCAAGGATG ACGACTACCG GGAAATCGTC GCCGCGCTGC TCAAAGCTGC GAAGTCGTAC
GGATTGGTCG TCTCCGAGGA GACCGAGTTT GGCATGACGG GCTACCAGCT CAACGGAACC
GGCCTAGTTT GGGTTTTGGG GGGCGGCAAG AGCAAACGGG CTGCGGACGA TAATGCGTTT
TTTCGCAGCC TATACGGAAA CATTGCAGGG ATGCTCGCCA ATCCGGTGCA TCGCCTCTTT
GATTTCGAGG CGAGAGAGCA CACGGCACAG GTCGAGCAGG AAGACCGCTT GGAGCGGGAA
GCACGTTTCC GATTTACGCA GAAAGACCGC AACGACTGGC TCAACGCAAA GGGCAAGCAG
CTGGAGTGGC TACCGGTATT GTTTTGTTCG CCAACGATGG AGTTGGGCGT CGACATCTCG
TCGCTCAATA CGGTTTATCT GCGTAACGTT CCTCCGACGC CTGCGAATTA TGCGCAACGT
AGTGGACGTG CTGGTCGCGC TGGTCAACCG GCTTTGGTCA TTACGTACTG TGCTGCCCAG
TCGCCGCACG ACCAATACTT CTTCCGCGAC CCAGTCCGGA TGGTCCACGG TCAGGTGAAT
CCGCCCACGC TCGATTTGGC GAATCGCGAG CTTATCCAGA GCCACCTCCA CGCCATTTGG
CTGGCTGAGA CGGGCAAGAA GCTGGACAAG AGCGTACGTG GCTTGTTGGA TATGAGCGAG
CCCGCTGCGC CGCTGACGGA GGAGTACCGG CAGGCAATGG ATGCCGATGC TCCGCAGAAA
CGCGCGCATG TGCGCGGGTT GCGAGTACTT GGCATGTTGT CCTCGGAATT CACCTCCGAC
AAGGCGCCTT GGTACGACGA GGCCTTTGCG GAGCAGGTTT ATCGTCGCGC GTTTCAATCC
TTCGACCATG CGCTTGACCG TTGGCGCGAC CTATTTTCCG CAACTAAGCG GCAAATGGAA
ATCAACCAGC AGGTGATGAA TAATCCGGCC GCAAGTGAGC GCGAACGCCG GGATGCCAAG
CAGCGACATG ACGAAGCCTT TCGTCAGCAA TCGCTGTTGC TGCAGGAGTC GGGTTCGGCA
AATTCTGACT TCTACACCTA CCGGTATCTT GCTAGCCAAG GGTTTTTGCC AGGCTACAAC
TTCCCTCGCC TACCCCTGAT GGCCTATATC CCGGCACGCA AGGGAAAAAT CGGACGAGAG
AACTTCCTGT CGCGCCCGCG CTTTTTGGCC CTCTCGGAGT TCGGTCCCTA CAGCCTCATT
TATCACGAGG GCAGTCAATA TCGCGTCACT CGAGCCATGT TGTCAGTTGG CGCCGACGAC
CAAGTCTCCG TCGGAGCCAG GCTCTCAACC GAGGTCGCGC GTATTTGTCC AGTTTGCGGT
TACGGGCACT TTCGCGGCCA ACGTGATGCC GACCGCTGTG TGTCCTGTAA CGCTCCGCTC
GCGGACGCAG TTGCGGTCCA GAATCTCTAT CGCATTGAGA ATGTCTCGAC GCGGCGTGCC
GAACGCATTA CCGCCAATGA GGAAGAGCGG GTGCGGCAGG GGTATGAGAT GCAGACAACC
ATTCAGTTCG GCGAGCAGGA CGGTAACTTG CAGGTCTTGC ATGCGGAACT GAAAGACGCG
ACGGGGCCCG TGCTCGCGCT GCAATACGGT TCGGCCGCCA CAGTCTGGCG CATGAACCTT
GGGTGGCGAC GTCGGAAGGA AAAAAGCCTC CTTGGCTTCA TGATTAATCC GGTCACCGGC
CATTGGATGG GGGGCGCCGA CGAGTCGGGT GAGCCAGATG GCGAAGCACC GCCGGACAAG
ACGCCGCCGC AACGTATTGT CCCGTACGTC GAAGACCGAC GGAATGTCCT CATCGTGCGC
CCTGTGGAGG AACTCGGCCT GAAAACCATG GCGACCCTGC AGTACGCGCT CAAGCGGGGC
ATTGAGGCAG TCTTTCAGTT GGAAGAAAGT GAGCTGATGG CGGAGCCGCT GCCAAAAGCA
GACTTGCGCC ATTCGATTCT GTTCTACGAA TCGGCGGAAG GAGGGGCCGG GGTGCTCACG
CGGATTGCGA CCGAGTCCGG AGCGTTGGCC AGGGTAGCGG CCGAGGCCCT AAGAATCATG
CATTTCATTT CTTCAGCGGA TGGCAAGTGG GATGCGGATG AATTGGACCA AGAGAAAGAT
GCTGCTGGCA GACCAATCTG CGAAGCGGGG TGTTACAAGT GCTTGCTCTC GTACTACAAC
CAGCCGGACC ACTCCAACAT TGACCGACAG GACGTGGAGA ACGAGGGCAA GGTGCTGGAT
GTGCTCTGTC GACTGACCCG TGCTGAGGGC GCAGTGGGGA CTTTTGGCCG GACGCCTGAG
GTCCAGCAGG GTGAGCTGGA ACGGATTTCG GGGAGCTCGT TGGAACAAGC CTGGCTTGAG
TACGTCAAGG CGCACGGTTA TCGCATGCCG GACCGTGGTC AGGAAAGCAT TGCGCGTTGT
AACACTAAGG CGGATTTCTT TTACGAGGAC TGGAAGGCCG CTGTCTTTAT TGATGGTCCC
CACCACGATT CCCCGCGTCA GGCGGAAGCA GACGCTGACA TTACGCGATG TCTGGAGGGC
GCTGGTTATT ACGTAGTGCG CTTCCCGAAG GACGTTAGCA GCTGGGCAGA GGTCTTCGCC
GCCCATGCAG CACTCTTTGG AACTGGAAAG TAA
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| Protein sequence | MDVFEFRGKL VSDYATFTRS FTRIRATDIK SFVDAAYDSE RYWPAPLIQV NPNFKVGSNV
ETLVKDGGLH AECARIFRAG KSASNAGVPL TLFKHQEEAI SFAQSGESYV LTTGTGSGKS
LAYFIPVIDA ILKAKASDNT PRTRAIVIYP MNALANSQLE ELGKFLADYG DHAPVTYGRY
TGQEDDEERQ RLASNPPDIL LTNFMMLELL MTRQDDTDKA VIRNAKGLRF LVLDELHTYR
GRQGADVALL VRRVREALAD ELQCIGTSAT MATEGTEQKK NEKVAEVAGR LFGTSITAAN
VITETLQRVT PEHVLVEHIR SSLKEAIQAG LPSAPSFAEL AEHPLAIWVE LNLGLVRNEG
KWRRARPVTL ADAGKHLAVD AGIDEGLART TLTDFLLLAY TTTDKPLVEG GRSLFAFKLH
QFISGGSNVY GTLEPEDRRF LTLEGSQYVP GERERRLFAL HFCRECGQEY APVWDESVAG
GRIFNPRSIE ERTHEDEDIK SGYFMPDTTG IWDDTLDRYP ETWLEQKKDG DLKLKSNYRK
RQPQPVRVDA TGQHVADGTP GWYIPGSFGF CLNCGVVHQT AGKESLRLTG LSGEGRSSAT
TMLTLSALRY LYEEDAQLKD EAKKVLGFTD NRQDAALQVG HFNDFLQVLL QRAALLAAVE
QSGGRLNEGE ISHAVFSALG FDRDEPGVRA EYMQEPEVKG NARRQVQDVM RAIFGYRVYF
DLRRGWRFNN PNLEQLGLVH IEYQDIDKLA ADVSEWADAP LILQAASAAV RKRLLTLLFD
AMRQGLCLAS RFLDRTELDK LKTASFANLR EPWGFTEDEA PVAANWFITT GRPRDEDRRN
IEYLVSGSAR SKLGKDIKRA STWQEVDQDG TKRDNPHAVK IKDDDYREIV AALLKAAKSY
GLVVSEETEF GMTGYQLNGT GLVWVLGGGK SKRAADDNAF FRSLYGNIAG MLANPVHRLF
DFEAREHTAQ VEQEDRLERE ARFRFTQKDR NDWLNAKGKQ LEWLPVLFCS PTMELGVDIS
SLNTVYLRNV PPTPANYAQR SGRAGRAGQP ALVITYCAAQ SPHDQYFFRD PVRMVHGQVN
PPTLDLANRE LIQSHLHAIW LAETGKKLDK SVRGLLDMSE PAAPLTEEYR QAMDADAPQK
RAHVRGLRVL GMLSSEFTSD KAPWYDEAFA EQVYRRAFQS FDHALDRWRD LFSATKRQME
INQQVMNNPA ASERERRDAK QRHDEAFRQQ SLLLQESGSA NSDFYTYRYL ASQGFLPGYN
FPRLPLMAYI PARKGKIGRE NFLSRPRFLA LSEFGPYSLI YHEGSQYRVT RAMLSVGADD
QVSVGARLST EVARICPVCG YGHFRGQRDA DRCVSCNAPL ADAVAVQNLY RIENVSTRRA
ERITANEEER VRQGYEMQTT IQFGEQDGNL QVLHAELKDA TGPVLALQYG SAATVWRMNL
GWRRRKEKSL LGFMINPVTG HWMGGADESG EPDGEAPPDK TPPQRIVPYV EDRRNVLIVR
PVEELGLKTM ATLQYALKRG IEAVFQLEES ELMAEPLPKA DLRHSILFYE SAEGGAGVLT
RIATESGALA RVAAEALRIM HFISSADGKW DADELDQEKD AAGRPICEAG CYKCLLSYYN
QPDHSNIDRQ DVENEGKVLD VLCRLTRAEG AVGTFGRTPE VQQGELERIS GSSLEQAWLE
YVKAHGYRMP DRGQESIARC NTKADFFYED WKAAVFIDGP HHDSPRQAEA DADITRCLEG
AGYYVVRFPK DVSSWAEVFA AHAALFGTGK
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