| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2374 |
|---|
| Symbol | |
|---|
| ID | 8020038 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 2496724 |
|---|
| End bp | 2498136 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644831156 |
|---|
| Product | amidohydrolase |
|---|
| Protein accession | YP_002982319 |
|---|
| Protein GI | 241663959 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1473] Metal-dependent amidase/aminoacylase/carboxypeptidase |
|---|
| TIGRFAM ID | [TIGR01891] amidohydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.949854 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCACGC CACCCATCCG TTTGAAACGT ACTGCGCTTG CCTGGCTGCT GGCCGGTGCT
GCCTTGCCGG CATTCGCACA GATTCCGTTC AGCCCCGGCG GTGCATCGTC CGCGCCAGCA
CAGGCTGCAC CCGCGGCGGG CGGGATCGAC GTGGCGCAGA TCAAGCCTGC GGTGGACGCG
GCGGTCAATG CCGAATATGG GCAGCTCGAC CTGCTCTACA AAGACATCCA CGCGCACCCG
GAACTGGCGT TTCAGGAAAC GCGCACGGCA GCCAAGCTAG CGGAGCAGAT GCGCACGATC
GGCTTTGCCG TGACGGAGCA TGTCGGCAAG ACCGGCGTGG TGGCGGTCTA TCGCAATGGC
GCCGGCCCGA CGATCCTGGT GCGCTCCGAA CTCGATGCGC TGCCGATGGA GGAGAAAACC
GGCCTGCCCT ACGCCAGCCA CGTCCACACG AAATGGCGCG GCGAAGACGT GGGCGTCGCG
CATAGCTGCG GGCACGACCT GCACATGGCG TCGTGGGTGG GCACGGCGAA GACGCTGGTG
TCGCTCAAGG ATCGCTGGCA CGGGACGCTC GTGTTCGTCG CACAGCCTGC CGAAGAAACC
GTATCGGGCG CACAGAGCAT GATCGACGAC GGCTTCTTCA AGCGCTTCCC CAAGCCCGAC
TATGCGTTTG CGCTGCACAC GGGCCCGGGG CCGTACGGTT CGATCGTCTT CAACAGCGGC
CCGATCACGT CGAACTCCGA CGGGTTGGAA ATTACGTTCA AAGGTCGTGG CGGGCACGGC
TCTGCACCAG ACAAGACGAT TGACCCGGTG ATGATGGCGG CGCGCTTCGT GGTCGACCTG
CAAAGCGTGA TCAGCCGCGA GAAGGATCCG CAGGAATTTG GCGTGGTGAG CATCGGCGCC
ATCCAGGGCG GCAGCGCTGA GAACATCATC CCGGACAGCG TGCTGCTGCG CGGGACGATC
CGTTCGTACA AGCCGGCGGT GCGCCAGAAG ATGCTCGACG GTATCCGGCG CACGGCCAAG
GCCGTCACCG AGATGTCGGG CGCGCCGGAC GCCGATATCA AGATCACCGA AGGCGGCAAG
GCGGTCAACA ACGACCCGAC CGTGGTCGCG CGCACCGAGG CGATGTTCAA GACCGCCTTC
GGCAACGACC GCGTGCTGCG CGTGCCGCCC ATCACGGCCA GCGAAGATTT CTCGGCGTTT
GTTGACGCGG GCATCCCGTC AATGTTCTTC TTCATCGGCG TGAACGATCC GCAGACATTC
TTCGCCTCGC TCAAGCCGGG TGCCAAGCCG CTGCCGACCA ATCATTCTCC GCTGTTCGCA
CCGGTGCCCG AACCGTCCAT CAAGACGGGC GTGACGGCGA TGTCGCTGGC AGTGCTCAAT
GCACTGCAAT GGAACAAGGC GTCGGGCCAG TAA
|
|---|
| Protein sequence | MITPPIRLKR TALAWLLAGA ALPAFAQIPF SPGGASSAPA QAAPAAGGID VAQIKPAVDA
AVNAEYGQLD LLYKDIHAHP ELAFQETRTA AKLAEQMRTI GFAVTEHVGK TGVVAVYRNG
AGPTILVRSE LDALPMEEKT GLPYASHVHT KWRGEDVGVA HSCGHDLHMA SWVGTAKTLV
SLKDRWHGTL VFVAQPAEET VSGAQSMIDD GFFKRFPKPD YAFALHTGPG PYGSIVFNSG
PITSNSDGLE ITFKGRGGHG SAPDKTIDPV MMAARFVVDL QSVISREKDP QEFGVVSIGA
IQGGSAENII PDSVLLRGTI RSYKPAVRQK MLDGIRRTAK AVTEMSGAPD ADIKITEGGK
AVNNDPTVVA RTEAMFKTAF GNDRVLRVPP ITASEDFSAF VDAGIPSMFF FIGVNDPQTF
FASLKPGAKP LPTNHSPLFA PVPEPSIKTG VTAMSLAVLN ALQWNKASGQ
|
|---|
| |