Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_1681 |
Symbol | |
ID | 8019334 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 1787905 |
End bp | 1788390 |
Gene Length | 486 bp |
Protein Length | 161 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 644830463 |
Product | type VI secretion system effector, Hcp1 family |
Protein accession | YP_002981636 |
Protein GI | 241663276 |
COG category | [S] Function unknown |
COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.666792 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0213097 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCACAGG ACATCTTCCT GAAGATCAAT GGCATCGACG GCGAATCTCA AGACTCGTCG CACAAGAACG AAATCGAAGT GCTGGTGTGG GACTGGAACA TCGAGCAACA GTCGAACATG CACGCCGGCA GCGGCGGCGG TGCCGGCAAG GCCACCGTGT CGGACCTGTC GTTCGAGCAC TACGTTGACC GTGCATCGCC CAACCTGATG AAGTACTGCC TGACTGGTAA GCACATCGAC CAAGCCACGC TGGTAGTGCG AAAGGCCGGC GGCAACCCGC TGGAGTACCT GAAGCTCACG ATGAGCGATG TGATCGTGAC CAGGGTGGCA CCGCGTGGTG CCGCGACCGA CGAGGCACGT GTGCGCGAGA AGGTGGCGCT GTCGTTCTCC AAGGTCAAGC AGGAGTACAT GGTGCAGAAC GCCCAAGGCG GTAGCGGTGG GGCGATCACG GCAGGCTACG ACATCAAGGG CAATAAGGAA GCCTAA
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Protein sequence | MAQDIFLKIN GIDGESQDSS HKNEIEVLVW DWNIEQQSNM HAGSGGGAGK ATVSDLSFEH YVDRASPNLM KYCLTGKHID QATLVVRKAG GNPLEYLKLT MSDVIVTRVA PRGAATDEAR VREKVALSFS KVKQEYMVQN AQGGSGGAIT AGYDIKGNKE A
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