| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1115 |
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| Symbol | |
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| ID | 8018757 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 1174856 |
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| End bp | 1176202 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644829896 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_002981079 |
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| Protein GI | 241662719 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000487521 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.525314 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGTCG CCGACGTCCG CCGCATTACC GCACTGGCTT GGCCTGTGCT GATCGGCCAG
TTGGCGGTCA TCGCTTTCGG CGTGCTCGAT ACGGCGATGG CTGGCCGCGC CTCTGCAGCA
GACCTCGCGG CCATCGGACT CGGCGGGTCG ATCTACGTGA CGGTGTACAT CAGCCTGATG
GGTGTGCTGC AAGCGCTCTC GCCCATCGCC GGCCAACTGT ATGGCGCGCA AAGGCACAGC
GAGATCGGCG AAGAAGTGCG CCAGGCTGTC TGGCTCGGGC TGGTGCTCGC GGCGATCGGC
ATGCTGATCC TGTGGTTCCC CGCCCCACTA CTGCAACTGG CAGACGCCAC GCCCGAACTC
GCGGAAAAAG CCACCGCCTA TTTGCGGTAT GAAGCACTCG CATTACCTGC AGCGCTCGGC
TTCCGGATCT ACTCTGCGTT GAACAACGCG CTGTCGCGCC CAGTGATGGT GACGGTACTG
CAGCTCGCCG GCCTCGCCAT CAAATTTCCG CTCAACGCAC TGTTTCTGTA CGGCGGCATG
GGCGTCCCCG CGATGGGTGG CCCGGGCTGT GCACTCGCCT CGATGATCAT CAGCTGGCTA
TGGTTTGTGG CTGCGGCCGC CATCCTGATG CGCAATCCCG CATACAAGCC GCTTGCGATT
TTCACGCAAT ACTCACCACC CAATCGCGCC CGGCTGTGGG CACTCGTACG CCTGGGTGTG
CCGATGGGCT TCACCTACCT GATCGAGATC ACATCGTTCA CGTTGATGGC GATCTTCATC
GCGCGTCTCG GTACGGTGGT CTTGGCAGGG CATCAGATTG CCGCCAACCT TGGGGCAGTG
GCCTACATGG TGCCGCTGTC CTTGTCGATC GCGACGTCGA CGCTGGCTGC GCAGTCGATC
GGCGCGCGCG ATCGCGTTGC GGCCCGACGC ATCTCGCTGA ACGGCATCAA ATTGGCGGTG
ATGTGCGCGA TCATCGTCTG CGCGGCCGTG CTGTTCTTGC GTCGCGAGCT GGTCAGCCTC
TACACGCACG ATGCTACTGT CCTGGCGATT GCGGTGCCGC TGCTGCCTTT CATCGCCTTC
TATCAGATGT TCGATGCGCT GCAGGTCATG ACTGCATTCA TCCTGCGCGC ATACAAGATC
GCGCTCATCC CGACCGTCAT CTACGCCTTA TCGCTGTGGG GCGTGGGTCT GGGCGGCGGC
TACGTGCTCG GATTTGGACT ACTGGGGGAG TTTGCGACGC CTCTGCGTGG CGCAGCCGGC
TTCTGGGCGG CCAACGCGCT CAGTTTGATG GTGGCCGGCG CGTTGCTGGT CAGCTATTTC
AATCGAGTTA GCCGTACCGC CGATTAA
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| Protein sequence | MFVADVRRIT ALAWPVLIGQ LAVIAFGVLD TAMAGRASAA DLAAIGLGGS IYVTVYISLM
GVLQALSPIA GQLYGAQRHS EIGEEVRQAV WLGLVLAAIG MLILWFPAPL LQLADATPEL
AEKATAYLRY EALALPAALG FRIYSALNNA LSRPVMVTVL QLAGLAIKFP LNALFLYGGM
GVPAMGGPGC ALASMIISWL WFVAAAAILM RNPAYKPLAI FTQYSPPNRA RLWALVRLGV
PMGFTYLIEI TSFTLMAIFI ARLGTVVLAG HQIAANLGAV AYMVPLSLSI ATSTLAAQSI
GARDRVAARR ISLNGIKLAV MCAIIVCAAV LFLRRELVSL YTHDATVLAI AVPLLPFIAF
YQMFDALQVM TAFILRAYKI ALIPTVIYAL SLWGVGLGGG YVLGFGLLGE FATPLRGAAG
FWAANALSLM VAGALLVSYF NRVSRTAD
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