| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0604 |
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| Symbol | |
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| ID | 8018230 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 639966 |
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| End bp | 641402 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644829383 |
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| Product | type I secretion outer membrane protein, TolC family |
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| Protein accession | YP_002980581 |
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| Protein GI | 241662221 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.836386 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGCGC GCGGTTCGCT TGTTGTGCTG TGCTGTTCGA TGATGCCGAT GTTCTCGTGG
GCGCAGTCCC CACCGAACAC GGCCGCTGCA ACCGACCTCC TCTCCGCCTA CCGCGCTGCG
CTGGCGAACG ATCCGCAATT CGCATCGGCG CGCGCCCAGT CGCTGGCGCA ACGCGAGAAG
CTCACCCAAG GCCGCGCCGG TCTGCTGCCG CAAATTGGCG GCGCCTGGAG TTCCACGCGC
ATCATCTTCG ATCAAAACGC CCCGGCTGAA TTCAATAAGA CGTTCTCTTC GACGGGCTGG
ACGCTGTCAC TGTCGCAGCC GCTCTTCCGC TGGGACCGGT GGGAAACCTA CAAGCAAGGC
GAAATCGCTG CGCAGGCCGC CGAGGCTTCG CTGGCGCAGG CGCAGCTCGA CCTGATCACG
CGCACGGCGC AGGCCTACTT TGATGTGCTC AACGCCCAGG ACACGCTGCA GCTCGCCACC
GCGCAGCGCG ATGCGATCCA GCAGCAATAC GAACAGGCGC GCCGCAACTT CGACGTCGGC
AACGCCAACA TCACCGACGC GAACGATGCG CAGGCACGCC GCGACGCGAT CGACGCCAGC
GTCATCGCCG CACGCAGCGA CTTCGAGATC AAGCAATCAG CGCTCAAGCA GATCATCGGC
GAACCCGTTG GCACGCTGGC CGGCGTGCGC CCAGGCGTCA CGATCCCCCA GCCGGAGCCC
GCTTCAGCAG AACCTTGGGT GGACCAGGCG CGCAGCAGCA ACCTGCAGGT GGCACTGGCG
CAATACAACC TGCAAAGTGC AGAGCGCGAC GTGAAGAAGG CCACTGCGGG CCACCTGCCT
TCGGTTGACC TCGTGGCGCA GACCGGCCAC ACCAATGCCA GCGGCAACCA ATACCTGCCG
TCGCTGCCGG GCGGCGCGCG CTTCGACAGT TCACAGATTG GCGTGCAGGT GTCGATCCCG
ATCTTTGCGG GCGGTGCGAT CCAGTCGCGC GTGCGTGAAA ACATCGCGCT GGAAACCAAG
GCCGCAAACG ATCTTGAGTT CGCCCGCCGT TCTGCCGAAC AAGGTGCGCG GCAAGCCTAT
ATCGGCGTCA TTGCCGGACT TGCGCAGGTG AAAGCGCTGG AAGCGGCCGA GCTGTCGGCG
CGCACGGCGT ACGACTCCAA TCAGCTCGCC TACGGTGTGG GCGTACGCAT CGGCACCGAT
GTGCTGAATT CGCAGGCGCA GCTCTTTCAG GCACGCCGCG ATCTGGCCCG CGCGCGTTAC
GACACCATCG TCAACGGGCT ACGACTGAAG TCCGCCGCCG GCTCGCTGAC CGAGGCAGAC
GTGATCCAGG TGAACACGCT GCTCACGGCC AACGGCTCGA GCGATATCAC CGCGTTGCCG
CCGCCAAGCG CCAAACCCGA ATCGGCGAAA CCTGCCGGCA AATCCGCCAA ACGCTGA
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| Protein sequence | MAARGSLVVL CCSMMPMFSW AQSPPNTAAA TDLLSAYRAA LANDPQFASA RAQSLAQREK
LTQGRAGLLP QIGGAWSSTR IIFDQNAPAE FNKTFSSTGW TLSLSQPLFR WDRWETYKQG
EIAAQAAEAS LAQAQLDLIT RTAQAYFDVL NAQDTLQLAT AQRDAIQQQY EQARRNFDVG
NANITDANDA QARRDAIDAS VIAARSDFEI KQSALKQIIG EPVGTLAGVR PGVTIPQPEP
ASAEPWVDQA RSSNLQVALA QYNLQSAERD VKKATAGHLP SVDLVAQTGH TNASGNQYLP
SLPGGARFDS SQIGVQVSIP IFAGGAIQSR VRENIALETK AANDLEFARR SAEQGARQAY
IGVIAGLAQV KALEAAELSA RTAYDSNQLA YGVGVRIGTD VLNSQAQLFQ ARRDLARARY
DTIVNGLRLK SAAGSLTEAD VIQVNTLLTA NGSSDITALP PPSAKPESAK PAGKSAKR
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