| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0438 |
|---|
| Symbol | |
|---|
| ID | 8018063 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 462543 |
|---|
| End bp | 463283 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 644829217 |
|---|
| Product | two component transcriptional regulator, winged helix family |
|---|
| Protein accession | YP_002980416 |
|---|
| Protein GI | 241662056 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.173423 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTATCG CCTTGCTTGA AGACGATCCC TTCCAAAGCG AAGTCATCGT CCAGATCCTG
TCCCAGTCCG GCCACGACGT GGTGACCTAC ACCGACGGTG CGACCTTGCT GCGCATGCTG
GGCCGATCGT CGTACGACAT GCTGATCCTC GACTGGCATA CGCCGGGCAT GCTCGGGATC
GACGTACTGA GCGTCGTGCG CAGCCGCCAT AAAGAAGTAT TGCCGGTGCT CTTTGTCACG
GCCGAAGAAG GCGAGAAAAG CCTTGTGCGC GCCCTCACGC ACGGCGCGGA TGACTACATC
GCCAAGCCAT TCCGCATTGC CGAGCTGCGT GCGCGCGTCG ACGCGCTGCT GCGCCGTGCC
TATCCCATTC CGTATGGTCG TCTGCCATTC GCCGTAGGGC CGTACCACTT CAACACGCAG
CGCCAACAGA TCACCCTGCA CGGCGAACCC GTTACGCTGA CGGGCATCGA GTTCCAGCTG
GCGCTGCTGT TGTTCTCGAA CGTGGGCCGC ACGCTGTCCC GCGACCACAT CTTCGGGCAG
GTGTGGGGCC GCAATTCATC GGAATACACG CGCACGATCG ATAGCCACGT GTCGCGCATC
CGCATGAAAC TGAATATCGA GCCGGTGAAC GAGGTGCGCC TGGTGGCGGT GTACAAGCAC
GGCTATCGCG TCGACCATCT CAAACCGGCG AACGACATGA ATGCGCTGTC CGAGATGGAT
ATCGCATCGT ATGACGCTTA A
|
|---|
| Protein sequence | MRIALLEDDP FQSEVIVQIL SQSGHDVVTY TDGATLLRML GRSSYDMLIL DWHTPGMLGI
DVLSVVRSRH KEVLPVLFVT AEEGEKSLVR ALTHGADDYI AKPFRIAELR ARVDALLRRA
YPIPYGRLPF AVGPYHFNTQ RQQITLHGEP VTLTGIEFQL ALLLFSNVGR TLSRDHIFGQ
VWGRNSSEYT RTIDSHVSRI RMKLNIEPVN EVRLVAVYKH GYRVDHLKPA NDMNALSEMD
IASYDA
|
|---|
| |