| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5290 |
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| Symbol | |
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| ID | 6412991 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 5707204 |
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| End bp | 5709225 |
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| Gene Length | 2022 bp |
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| Protein Length | 673 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642715180 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_001994252 |
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| Protein GI | 192293647 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | [TIGR01779] TonB-dependent vitamin B12 receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAATCCC GACCCGCCGC GCCGCGGCCT TGCTCCGCAC TTTCACGCGC GCTTCTTGCC
TCCACCATTC TGGTGCCCGC GCTCTCGCTC ACCACGGCTG CCGCCGCGCA GGACGTGCTG
CCCGAGATCG TCGTCAGCGC CACCGCGACC GAAACGCCGC GCGAGCAGGT GGCGAGCTCG
GTGACCGTGA TCACCGCGGA CGATCTCGCC CGCTATCAGC AACGCACCGC CGCCGACGCG
CTCAGCATGG TGCCCGGCCT CAACGTGGTG CGCACCGGCG GCCCCGGTGG CTCGACCTCG
ATCTTCATGC GCGGCACCAA CTCCAACCAC GTCAAGGTGC TGATCGACGG CATCGACGCC
GGAGATCCGA GCAAGCCGAA CGGCGCTTAT GATTTCGCCA ACCTGCTGAC CTCCGACATC
GAACGGATCG AAGTGCTGCG CGGCCCGCAG AGCGGCCTGT ACGGCTCGGA CGCGATCGGC
GGCGTGATCT CGGTCGTCAC CAAGCGCGGC AGCGGGCCTG CCAAGCTGAC CGGCTCAATC
GAAGGCGGCT CGTTCGGCAC CTTCAACCAG ACCGCGCGCG CCGCGGGCTC GCAGGACAAT
TTCGACTACG CCTTTAACGT CGCGCATTAT CGCACGACCA GCCTGCCGGT GACGCCGCTC
GATCTGCTGG CGCCGGGCCA GCAGCGGAAC AACGACAACT ACGACAACCT GACCTATTCG
ACCCGGCTCG GTGTCCGCGC CAGCGACGAA CTCGCCTTCA ACTACGTCGC GCGCTACACA
GACGCTCACA AGGGCTTCAC CAGCGACGAC TATTCGAACT ATCCAAATTC TTTCCCAGCA
TCGCTGCAGA GCACCATGGC AAGCCGCGAT TTCCTAACCC GCAGCGAAGC GGTGTGGTCG
CCACTCGGCA ACTTCACCAG CACGTTCGGG GTCAGCTACA GCAACCAATG GAACCGCACA
TTCGATCCCA ATCCAAATTT CACTACCAAC CTCATCACCG GTACCGTCGG TATCTCGCCG
CCAAGCTCGT ACACCGGTGA ACGCACCAAG TTCGACTGGA AGGGCGTTCT CGACGTAGGC
TACGGGCAGA AATTGGTGGT CGGCACCGAA CGCCAGGACG AGACGATACG CACCAACTCG
ATGGGCGACT ACGACTTCAC CGGAAATTAT CAGCAGAAGA CGCTCCACGC TCGCACCGGC
AACACCGCAG GCTTCGTCGA ACTGCAGTCG GAGTTCACCA AGAACTTTTT CCTGGTCTCC
AATGTGCGCT ACGACGACAA CGACAGCTTC GGCGGACATT CGACCTGGCG GGTCGCGCCG
GTGTTCATCG TGCCGACCCT CGAGACGCGG CTGAAGGCGA CCTACGGCAC CGGCTTCAAG
GCGCCGACGC TGATCCAGCT CTACGTCAAC AATCCAGCCT ATGCCACAGT CGGCAACCCG
GCGCTGAAGC CGGAGACCAG CAAGGGCTAC GATGTCGGCT TCGAGCAGCC GCTGTTCGCC
AAGCGCGTCG TTTTCGGTTC GACGTATTTC AACAACGAGA TCAACGACCT GATCAACTCG
ACCGGCTACG ACGTCACGCT CGGCGGCTAC AGCTACAAGA ACATCGGCAT GGCGCGCACC
TCGGGCGTCG AATCGTTCGT GTCGTGGCAG GCGACCGAGA CGCTGCGCTT CCGGGTCGAC
CACACCTATA CACACGCCAT CGACCAGACG ACCGACCAGA AGCTGCGGCG ACGTCCCGAC
AACAAGGTGA CGATGGCGGC GATCTGGAAT CCGGTCGAGC GCGCCACGGT GTCGGCGACC
GTGCTCTACA CCAGCTCGTG GGTCGACTAC GACCGGTTCG GCACCACGTT GCTCGACGCG
CCGTCGTTCA CCACCGTGAA CCTGGCGGCC AGCTATGAGG TCGATCCGCA CGTCACCGTG
TTCGGCCGCA TCGACAACCT GTTCGACAAG AAATACGAGG TGCCGGTCGG CTTTCTGCAG
CCCGGATTCG GCGCCTTCGC AGGCGTGCGC GTCACCAACT AG
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| Protein sequence | MQSRPAAPRP CSALSRALLA STILVPALSL TTAAAAQDVL PEIVVSATAT ETPREQVASS
VTVITADDLA RYQQRTAADA LSMVPGLNVV RTGGPGGSTS IFMRGTNSNH VKVLIDGIDA
GDPSKPNGAY DFANLLTSDI ERIEVLRGPQ SGLYGSDAIG GVISVVTKRG SGPAKLTGSI
EGGSFGTFNQ TARAAGSQDN FDYAFNVAHY RTTSLPVTPL DLLAPGQQRN NDNYDNLTYS
TRLGVRASDE LAFNYVARYT DAHKGFTSDD YSNYPNSFPA SLQSTMASRD FLTRSEAVWS
PLGNFTSTFG VSYSNQWNRT FDPNPNFTTN LITGTVGISP PSSYTGERTK FDWKGVLDVG
YGQKLVVGTE RQDETIRTNS MGDYDFTGNY QQKTLHARTG NTAGFVELQS EFTKNFFLVS
NVRYDDNDSF GGHSTWRVAP VFIVPTLETR LKATYGTGFK APTLIQLYVN NPAYATVGNP
ALKPETSKGY DVGFEQPLFA KRVVFGSTYF NNEINDLINS TGYDVTLGGY SYKNIGMART
SGVESFVSWQ ATETLRFRVD HTYTHAIDQT TDQKLRRRPD NKVTMAAIWN PVERATVSAT
VLYTSSWVDY DRFGTTLLDA PSFTTVNLAA SYEVDPHVTV FGRIDNLFDK KYEVPVGFLQ
PGFGAFAGVR VTN
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