| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5272 |
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| Symbol | |
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| ID | 6412973 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 5686152 |
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| End bp | 5686958 |
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| Gene Length | 807 bp |
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| Protein Length | 268 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642715162 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001994234 |
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| Protein GI | 192293629 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCAAGG ATCTGTTTTC GCTGCAAGGC CGCGTCGCTA TGGTGACCGG CGGCTCGCGC
GGCATCGGCA AGATGATCGC GGCCGGCTTT CTCGCTTACG GCGCGACGCG CGTTTACATC
ACCGCGCGCA AGGCCGCAGC GTGTCAGGCC ACCGCCGACG AACTCACCGA AATGTATCCC
GGCGAGTGCG TCGCGCTGCC GATCGACATC TCGACCATGG CGGGCATTGA TATGCTGGCC
GCCGAGATCA AGCGCCGCGA GAGCTCGCTC GACATCCTAG TCAACAACGC CGGTGCCGCC
TGGGCGGCTG ACTTCGACGA ATTCCCGGAG AGCGGCTGGG ACAAGGTGAT GGACCTCAAC
GTCAAGACGC CGTTCTTCCT GACCAAGGCG CTGGCACCGC TGCTGCGCGC CGCCGCGAGC
GCCGAACAGC CCGGCAAGGT GATCAACATC GCCTCGATCG ACGGCATCTT CGTCAATCCG
CTCGAGACCT ATCCCTACGC GGCGTCGAAG GCCGGCCTGA TCCACCTCAC CCGCCGGCTG
GCGGTGAGGC TGATCAAGGA CCACATCGTC GTCACCGCGA TCGCGCCGGG ACCGTTCGCC
TCCGACATGA ACAAGGCGGC GCGCGACGAA TCCGACGCGG TCGCCAAGCG CGTCCCTGCG
GGCCGGATCG GCACCGATGA GGACATGGCC GGCACCGCCG TGTTCCTCGC CTCGCGCGCC
GGCGACTACG TGGTCGGCTC GACCGTGACG GTCGACGGCG GCGTTGCCTT CGCCAACCCG
GGCATCAAGG GCGACGGCTG GGCGTAA
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| Protein sequence | MFKDLFSLQG RVAMVTGGSR GIGKMIAAGF LAYGATRVYI TARKAAACQA TADELTEMYP
GECVALPIDI STMAGIDMLA AEIKRRESSL DILVNNAGAA WAADFDEFPE SGWDKVMDLN
VKTPFFLTKA LAPLLRAAAS AEQPGKVINI ASIDGIFVNP LETYPYAASK AGLIHLTRRL
AVRLIKDHIV VTAIAPGPFA SDMNKAARDE SDAVAKRVPA GRIGTDEDMA GTAVFLASRA
GDYVVGSTVT VDGGVAFANP GIKGDGWA
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