| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5248 |
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| Symbol | |
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| ID | 6412949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 5657813 |
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| End bp | 5659249 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 642715138 |
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| Product | multi antimicrobial extrusion protein MatE |
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| Protein accession | YP_001994210 |
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| Protein GI | 192293605 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGATA TTGCCGTTGC GGAGTTGCCG CCGGTTGCGC CAGCCGCGCC GGCCCCGCCT
GCCGCGACGC CTCCACCTCC GAAAAATCCG CTGCTCGACG ATGGCATCCT GCGCACGCTG
CTGCGGCTGT CCTGGCCCAA CGTGGTGGCG CTGACGGCGG GCACCTGCGT GGCGGTCGCC
GAGACCTCCT ATATCGGCCG GCTCGGCACC GAGGCGCTGG CCGCGATGGC GCTGGTGTTT
CCGTTCGTGA TCCTGACCAT GACGATGTCC GGCGGCGCGA TGGGTGGTGG CGTTGCCTCG
GCGATCGCGC GGGCGCTTGG CTCGGGCGAC GACGACCGCG CAGCGGTGCT GGCGATGCAC
GCGCTGCTGA TCGGGCTGTG CTTCGGCCTG GTGTTCACGG TCGGGATGCT GACCTTCGGC
GAGCGGGCGC TGGCGCTGCT CGGCGGCCGC GGCGCGGTGC TGAGCCAGGC CGCCGGCTAT
GTGCACATCT TCTTTGCCGG CGCGGTGGTG CCGTGGCTGA TGAACACCTT CGCGGCGATC
CTGCGCGGCA CCGGCAACAT GAAACTGCCG TCGCTGATGA TCCTCAGCTC GGCGGTGCTG
CAGATCGTGC TCGGCGGCGC GCTCGGCCTC GGCTTCGGAC CGATCCCGCG GTTCGGCATG
CCCGGCGTTG CCGCCGGCAC GCTGACGGCA TTTTCGATCG GCGCTTCGGT GATGGCCTGG
GTGATCTTCT CCGGCCGGGC CGGGGTGAAG CCGCGGCTGG ACGGCTTCCG GATCGAGCGC
GGCATGTTCA TCGACATCTT GAAGGTCGGC GCCGTGTCGT GCTTCTCGCC GCTGCAGTCG
GTGCTGACCA TCACGATCTT CACCCACATG CTGGCGCATT TCGGCACCGC GGTGCTGGCC
GGCTACGGCA TCGGCGGCCG GCTGGAGTTC ATGCTGACCT CGATCGCGTT CGCGGTCGGC
ATCGCCTCGG TGCCGATGAT CGGCATGGCG ATCGGGGCCA GCCGGGTGAA GCGGGCGCGG
CAGATCGCCT GGACGGCCGG GCTGGTGTCG TTCCTGTTCG TCGGGGTGGT CGGCACCGGG
ATCGCGATCT TTCCGCACCT CTGGATCGAC CTGTTCACCG ACGATGCGGC GGTACGGCTC
GCCGGTGAGC AATATCTCCG CGCCGCGGCG CCGATGTACG CCTTCATCGG GCTGTCGATC
TCGATGTATT TTTCCGCGCA GGGCGCCGCC AGGGTGCTGG GACCGGTGTT GGCGCAGACC
GGGCGGCTGC TGTTCGTGGT CGGCGGCGGC TGGCTGCTGA TCAAGAGCCA TGGCAGCGCC
GGCAGCTTCT ATCTGCTCGC CGCAGGCTCG ATGGTGCTGC TCGGTGTGAC GTCAGCGCTG
AGCGTGCTGG TGACGCGCTG GGGCCCGAAG CCGCCGGCCG CGTCGATCGC CGGCTAG
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| Protein sequence | MSDIAVAELP PVAPAAPAPP AATPPPPKNP LLDDGILRTL LRLSWPNVVA LTAGTCVAVA
ETSYIGRLGT EALAAMALVF PFVILTMTMS GGAMGGGVAS AIARALGSGD DDRAAVLAMH
ALLIGLCFGL VFTVGMLTFG ERALALLGGR GAVLSQAAGY VHIFFAGAVV PWLMNTFAAI
LRGTGNMKLP SLMILSSAVL QIVLGGALGL GFGPIPRFGM PGVAAGTLTA FSIGASVMAW
VIFSGRAGVK PRLDGFRIER GMFIDILKVG AVSCFSPLQS VLTITIFTHM LAHFGTAVLA
GYGIGGRLEF MLTSIAFAVG IASVPMIGMA IGASRVKRAR QIAWTAGLVS FLFVGVVGTG
IAIFPHLWID LFTDDAAVRL AGEQYLRAAA PMYAFIGLSI SMYFSAQGAA RVLGPVLAQT
GRLLFVVGGG WLLIKSHGSA GSFYLLAAGS MVLLGVTSAL SVLVTRWGPK PPAASIAG
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