Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_5002 |
Symbol | |
ID | 6412694 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 5386295 |
End bp | 5387242 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642714885 |
Product | TRAP transporter solute receptor, TAXI family |
Protein accession | YP_001993966 |
Protein GI | 192293361 |
COG category | [R] General function prediction only |
COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.117483 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGGCCA GATTGTTTGG TGTCGCCGCG GCTGCGGTCA TTGTCCTGGC GGCGCCGCAA GCCCGCGCTC AGCAGTTCGT CAACGTGCTG ACCGGCGGCA CCTCCGGCGT CTACTATCCG CTCGGCGTCG CGATAGCCAA GATTTATGGC GAGAAGATTC CCAACGTCAA AGCTCAGGTC CAGGCCACCA AGGCATCGGT CGAGAACCTC AACCTGCTGC AGCAGGGGCG CGGCGAGATC GCGTTCTCGC TCGGCGACTC GCTGAAAGCT GCCTGGGACG GCGACGCCGA AGCCGGCTTC AAAGCCAAGC TCGACAAGTT GCGGGTGATC GGCGCGATCT ATCCGAACTA CATCCAGATC GTTGCGACGT CCGAAAGCGG GATCAAGACG CTCGCCGACC TGAAGGGCAA GAGCCTGTCG GTCGGCGCGC CGAAATCCGG CACCGAGCTG AATTCGCGCG CGATCCTGAA GGCCGCCGGC ATGGACTACA AGGATCTCGG CAAGATCGAA TATCTGCCGT TCGCCGAATC CGTCGACCTG ATGAAGAACC GCCAGCTCGC CGCCACGCTG CAGTCGGCCG GCCTCGGCGT CGCCTCGTTG AAGGACCTGT CGAACTCGTC CGACATCAAC GTCGTGGCGG TGCCGAAGGA GGTCGTCGAC AAGATCGGCC CGCCGTTCGT CGCCGAGACC ATCCCGGCTG GCACCTATAA GGGGCAGGAC AAGGACGTGC CGACCGCCGC GGTGATCAAC TATCTGGTGA CCTCGAGCGC CGTGTCCGAC GACCTGGCGT ATCAGATGAC CAAGCTGATC TACGAATCGC TGCCCGAACT CGCCAGCGCC CACGCCGCCG GCAAGGGCAT CAAGCTCGAA ACCGCCGCCG CCGGCAGCCC GGTCCCGCTG CACCCCGGCG CGATCAAGTA TTTCAAGGAA AAGGGCGTGC TGAAGTAG
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Protein sequence | MKARLFGVAA AAVIVLAAPQ ARAQQFVNVL TGGTSGVYYP LGVAIAKIYG EKIPNVKAQV QATKASVENL NLLQQGRGEI AFSLGDSLKA AWDGDAEAGF KAKLDKLRVI GAIYPNYIQI VATSESGIKT LADLKGKSLS VGAPKSGTEL NSRAILKAAG MDYKDLGKIE YLPFAESVDL MKNRQLAATL QSAGLGVASL KDLSNSSDIN VVAVPKEVVD KIGPPFVAET IPAGTYKGQD KDVPTAAVIN YLVTSSAVSD DLAYQMTKLI YESLPELASA HAAGKGIKLE TAAAGSPVPL HPGAIKYFKE KGVLK
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