| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4653 |
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| Symbol | |
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| ID | 6412339 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 5014723 |
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| End bp | 5015451 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642714532 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001993619 |
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| Protein GI | 192293014 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAAAGA AGCCCATCCG CCCCTCGTCC TCCCGCCGGT CAGTCGACCG AGGGCCCCCA
AAGCCTGCCG CCAAGAAGCG CAAATTACCG CCCGCTGGGC CGCGCCCGGC TCCGGCGACG
CCGCGGGCGC GTGTTGCCGG CGGGCGGTTG CCGGCTGATC CGCAGCTCAA GATCCGCCGG
TTGAAGGCTC AGCTTGCGGC GGCGCTGGCC CAGATAGACG TGTTGCGCGC TTGCGCCGAA
ACCGACTTCC TGCTCGGCAT CGCCAACCGC CGCGGCTTCG AGCGCGAGCT CGGCCGGGCA
CTGGCCTATA TCAAGCGCTA CGGCGCAGGC GGCGCGCTGA TCATTCTGGA TGTCGACCGG
CTGAAGCCGG TCAACGACAC GCTGGGCCAT GCAGCCGGCG ACGTGGTGCT GAAGAACGTG
ACCGAAGCGC TGCTGCGCCA CGTCCGCGCA TCCGATCTGA TCGGCCGGCT CGGCGGCGAC
GAGTTCGCCT TGCTGTTGTG GAATCTCGAC GAAACCGACG CGCGCGCCAA AGCGTTGGGT
TTGGAGGCCG CGGTCGACGA GCTTGCGATC CGCTATGGCG ATCAAACGAT CGAGGTCGGA
ATCTCCGCCG GCGTTGCAAT GCTGACGCCG GAGATGGACG CGGCCGAAGC GTTCGCCCTT
GCCGATCGGG CGATGTACGC CCGCAAGGCG GAGCGCCGCG CCGCGTCGGG CGCAACGATC
AGGCGATGA
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| Protein sequence | MKKKPIRPSS SRRSVDRGPP KPAAKKRKLP PAGPRPAPAT PRARVAGGRL PADPQLKIRR
LKAQLAAALA QIDVLRACAE TDFLLGIANR RGFERELGRA LAYIKRYGAG GALIILDVDR
LKPVNDTLGH AAGDVVLKNV TEALLRHVRA SDLIGRLGGD EFALLLWNLD ETDARAKALG
LEAAVDELAI RYGDQTIEVG ISAGVAMLTP EMDAAEAFAL ADRAMYARKA ERRAASGATI
RR
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