Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4514 |
Symbol | |
ID | 6412198 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 4860072 |
End bp | 4861874 |
Gene Length | 1803 bp |
Protein Length | 600 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642714396 |
Product | ABC transporter related |
Protein accession | YP_001993485 |
Protein GI | 192292880 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.350646 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGAAG CCCCACGCAA GATTACTGAC GACCCGTATG GCGCGTGGCA CCTCATCCGC CGCCTGGTGA TGGAACAGGC GTCCGCCTAT TGGCGGCGCT ACGCGCTCGC CTTCGGCCTG ATGGCGATCG CTGCCGCGGC GACCTCCGGC TCGGCCTTTC TGCTCGGCAA GGTGATCAAC CAGGCCTATG TCGACCGCGA CCTCCAGGGC ATCATGTTCT GGTCGGTCGT CACCCTTGTG GTGTTCAGCC TGAAGGGCGC AGCGACCTAC GGCCAGTCGG TGATCCTCAC CCAGATCAAG AACGCGATCC TGGCCAACAA TCAGCGCCGG ATGTTCCACA AGCTGATGAG CGAGAGCATC GGCTTCTTCT CGCAGCGGCA TTCATCCGAG TTCCTCGCGC GCCTCACCGC CGGCGCCAAC TCCGTCACCG AAGTGCTCAA CCTGCTGATC AATGCGATCG GCCGCGATCT GTTGTCGCTG ATCGGCCTGG TCATCGTGAT GGTGGTGCAG GATCCGTTCA TGGCGCTGTT CGGCCTTCTG GTCGCGCCGC CGGCCGCGTT CGTGGTGCGT AAGCTGGTGA AGCGCGTGAA GGGCCTGGCG CTGACGCAGT TCACCGGCAA CGCGCAGATC CTTGAGACCA TGCAGGAATC GCTGCAAGGC ATCCGGACCG TGAAGGCGTT CTCGCTCGAA AAGACCATGA GCGACCGGAT CGACGCCAAC ATCGCCGCGG TGCAGGCCAA CGCCGACAAG ATGGCGAAGG TGTCGAACCG CTCCAGCCCG CTGATGGAAA CGCTCGGCGG CTTCGCGGTG GCGGCGTCGC TGATGTATGG CGGCTACCGC GTGGTCGCGA CCGGCGCGAC GCCCGGCGAG TTCTTCTCGT TCCTGACCGC GTTCCTGCTC GCCTATGAAC CGGCGAAGCG GCTGGCGCGG CTCAACATCG AACTCAACAG CGGCCTGGTT GGCGCGCGGA TGCTGCTCGA GATCATCGAC AGCCCACCGA GCGAGCCGGA CGACAGCCAC AAGCCGGCGC TGCAACTCAC CGAGGCGCGG GTCGAATTCG ACCATGTCTC GTTCGCTTAT CGGCCGGACG AGCCGGTGCT GAACGCCATG AGCTTCGTCG CCGAGCCCGG CAAGATGACC GCGCTGGTCG GCCCTTCCGG CGGCGGCAAA TCGACGGTGC TGGCGCTGCT GCTGCGCTTG TACGAAGTGC AGTCCGGCGA AATCCGCATC GACGGGCAGT CGACCTCGAC CGTGTCGCGC GAGTCGCTGC GGCGGCAGAC CGCCTATGTC GGCCAGGACG TCTATCTGTT CCGCGACACC GTCCGCGCCA ACATCGCGTT CGGCAAGCTC GGCGCCACCG AGGACGAGAT CGTCGCCGCC GCCAAGGCCG CCTGCGCACA CGACTTCATC ATGAGCTTCC CGCTCGGTTA CGACACTCCG GTCGGCGAGC ACGGCGCGCA ACTGTCCGGC GGCCAGCGCC AGCGCATCGC GGTCGCCCGC GCGCTGCTGC GCGATGCCCC GATCGTGCTG CTCGACGAAG CCACCGCCGC GCTCGACTCC GAGTCGGAGA AGTTGGTGCA GGAGGCAATC GATCGTCTTG CCCGCGGCCG CACCACCATC GTGATCGCCC ACCGGCTGCA CACCATCATG CATGCCGATT CCATCCTGGT GGTCGAAGCC GGCGAGATCG TCGAGCAGGG CCGCCACGAC GACCTGCTGC GCCGCAGCGG CCGCTATGCC TCGTTCTTCC GGCTGCAGCA GCGGCATGCC GCGCCGCTGG CGCCGGCCGA CGCCACCGCC TAA
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Protein sequence | MTEAPRKITD DPYGAWHLIR RLVMEQASAY WRRYALAFGL MAIAAAATSG SAFLLGKVIN QAYVDRDLQG IMFWSVVTLV VFSLKGAATY GQSVILTQIK NAILANNQRR MFHKLMSESI GFFSQRHSSE FLARLTAGAN SVTEVLNLLI NAIGRDLLSL IGLVIVMVVQ DPFMALFGLL VAPPAAFVVR KLVKRVKGLA LTQFTGNAQI LETMQESLQG IRTVKAFSLE KTMSDRIDAN IAAVQANADK MAKVSNRSSP LMETLGGFAV AASLMYGGYR VVATGATPGE FFSFLTAFLL AYEPAKRLAR LNIELNSGLV GARMLLEIID SPPSEPDDSH KPALQLTEAR VEFDHVSFAY RPDEPVLNAM SFVAEPGKMT ALVGPSGGGK STVLALLLRL YEVQSGEIRI DGQSTSTVSR ESLRRQTAYV GQDVYLFRDT VRANIAFGKL GATEDEIVAA AKAACAHDFI MSFPLGYDTP VGEHGAQLSG GQRQRIAVAR ALLRDAPIVL LDEATAALDS ESEKLVQEAI DRLARGRTTI VIAHRLHTIM HADSILVVEA GEIVEQGRHD DLLRRSGRYA SFFRLQQRHA APLAPADATA
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