| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4070 |
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| Symbol | |
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| ID | 6411754 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 4372356 |
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| End bp | 4373183 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 642713952 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001993041 |
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| Protein GI | 192292436 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0214725 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGAGC GCGCCGCCCT GCCCCTGCAC GGCCGCCGCG CGATGGTCAC CGGAGCCGCG
CAAGGCATCG GCCTCGCGAT CGCCCGCACG CTGGCACTGC ACGGCGCGCA GGTCGTGCTG
GTCAACCTCA AGCACGAAGC CGGCGAAGCC GCGGCACGCG CGATCACGGA CGCAGGTGGC
GATGCGCGGT TCATCGTCGG CGACATGAGC GACGAGGATG CGATCGCCGC GACAGTGGCG
GCGAGCGCCG CCGCAATCGG CGGCCTCGAT ATCCTGGTCA ACAACGCCGC GCCGACGCAG
CGGGCGCGGC CGCCATTCGC CGAGCAGAGC GCCGCGCTGT GGGATGCGAC CGAAGCGGTG
ATGCTGCGCG GTTACATGCT CACCGCGCAG GCCGCGCTGC CGCATCTGGC GCAAGCGCGC
GGCGCGATCG TCAATCTGTC GTCGGTGCTG GCGCGCAGCG TGGCGCACGA AACCGCCGCC
TATCACGTCG CCAAGGCCGG CGTCGAACAG CTCACCCGCT ATCTCGCCTG GCATCTCGGC
CGCAGCGGCG TGCGGGTCAA CGCGGTGGCG CCCGGGGTGG TCGATCGCGA TATCGGCGCC
AAGCTCAGCG ACGATCCGGT CAATCGGGCT GTGCTCGAAG CTGCGGTGCC GCTCGGCCGT
GCCGCCACCG GCACCGAGAT CGCCGAGGTC GTGGCGTTCC TGTGTTCGCC GGCGGCCGGT
TACATCACCG GTCAGACGCT GGTGATCGAC GGCGGATTGT CGCTCGGCGA GCCGTTCGGC
GTCGCCCGCG CCACGCTGCG CGCGGCGGCC GGAGTCGGAG CCGCTTAA
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| Protein sequence | MSERAALPLH GRRAMVTGAA QGIGLAIART LALHGAQVVL VNLKHEAGEA AARAITDAGG
DARFIVGDMS DEDAIAATVA ASAAAIGGLD ILVNNAAPTQ RARPPFAEQS AALWDATEAV
MLRGYMLTAQ AALPHLAQAR GAIVNLSSVL ARSVAHETAA YHVAKAGVEQ LTRYLAWHLG
RSGVRVNAVA PGVVDRDIGA KLSDDPVNRA VLEAAVPLGR AATGTEIAEV VAFLCSPAAG
YITGQTLVID GGLSLGEPFG VARATLRAAA GVGAA
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