Gene Rpal_3976 details

Gene Information

• Locus tag: Rpal_3976
• ID: 6411658
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 4269511
• End bp: 4270215
• Gene Length: 705 bp
• Protein Length: 234 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 642713858
• Product: putative phage HK022 GP20-related protein
• Protein accession: YP_001992947
• Protein GI: 192292342
• COG category: [S] Function unknown
• COG ID: [COG4723] Phage-related protein, tail component

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGCGGA CCATTCATCT GCATGGCCGG CTCAAGACGC TTTTTGGCCC AAAGCACCGG 
TTTGATGTCC TCACAGCCGC AGAGGCGCTG CGGGCGCTCA ACTGCGCATT CCCCGGTGAA 
TTCGTCAAGG AACTGTCCGA GGGCGCCTAT TGCGTCGTCC GCGGTAACCG GCACTCGGGA 
ATGCAGCTCG ATATCGAACT GGTCACCAGC TTCAAGCTCG GCAATGCCGA TCTGCACATC 
ATTCCGGTCG CGGCCGGCGC CGCCAACGGC ACCAACAAAG CGGTAGGCAA GACCATCCTC 
GGCACGGTGC TTATCGGCGC CGCGGTGTTC ATGTCGGGTG GCGCTGCCGG CGGACTACTC 
GCCGGCATGG GCGCACAAGC CCTCACTGGC GTCGGTATCA CCTGGGGCAA CATCGCACTC 
GTCGGCCTCG GCCTGGCGCT CTCCGGCGGC GCGACGCTGC TCGCCAACGC GAGCGACCCC 
ACGACCAGCG ACACGAAGAC CGACGAGAGC TTCACGACCG CCGGTCCGAC CAATCTCGCG 
CAACAGGGGG CAGCAATCCC GCTGATCTAC GGCGAGACAA TGACCGGCTC CAATGTCATT 
TCGTTCGATG CCGACATCGA AGACATCAGG GCCTACCAGG ACGCCCAGGG CAGCATGGCC 
GACTACTACC TCGGCGCCTT CCAATATCGC GTGGGGAACT CCTGA 

 

Protein sequence

MMRTIHLHGR LKTLFGPKHR FDVLTAAEAL RALNCAFPGE FVKELSEGAY CVVRGNRHSG 
MQLDIELVTS FKLGNADLHI IPVAAGAANG TNKAVGKTIL GTVLIGAAVF MSGGAAGGLL 
AGMGAQALTG VGITWGNIAL VGLGLALSGG ATLLANASDP TTSDTKTDES FTTAGPTNLA 
QQGAAIPLIY GETMTGSNVI SFDADIEDIR AYQDAQGSMA DYYLGAFQYR VGNS