Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_3955 |
Symbol | |
ID | 6411636 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 4243630 |
End bp | 4245156 |
Gene Length | 1527 bp |
Protein Length | 508 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642713836 |
Product | AMP-dependent synthetase and ligase |
Protein accession | YP_001992926 |
Protein GI | 192292321 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.132635 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCTGG CGGAATGGCT TGCTGCGAGT GCCCGGCTAC GGCCGGGCGC TCCGGCGCTG CTGACGGGTA CCACGGTCGA TGCCGACTAC GCGACGTTCG CGTCGCGGGC GGCATCGTTC GGCGCGGCGC TGGCGCGCGA TTACGGCATC GCGCCCGGCG ACCGGGTCGC GTTGTTCGCG CATAATTGCA CGCGCTATCT CGAAGCGCTG TACGGCATCT GGTGGGCTGG CGCGGTCGCG ATCCCGATCA ACGCCAAGCT GCACGGCAAG GAAGTCGCCT GGATCTGCAG CAATGCGGAG GCCAGGCTCG CGCTGATCTG CGACGACACT GCCGACACTT TCAATGAGGC CTCATGCGAT CTGCCGCCCG GCCTGGCGGT GCTGGCGATC GACAGCGACG GCTTCGATCG CGCGCGTAGT GGCGCGGGTA GCAAGGCGCC GGTCGCACGC GACGATGACG ATCTCGCCTG GCTGTTCTAC ACCTCCGGTA CCACCGGCCG GCCCAAGGGG GTGATGCTCA GCCACGGCAA TCTCGTGGCG ATGTCGCTGA GCTATCTGGC CGATGTCGAC GCGGTGACGC CCGAGGACGC GGCGCTGTAC GCCGCGCCGA TCTCGCACGG CGCCGGGCTC TACAACATGA TCCACGTCCG GTTCGGTGCG CGGCATGTCG TACCGGAGTC CGGCGGGTTC GATCCGGACG AGGTGCTCGG CCTCGGCAAG CAGCTCGGCA ACGTCGCGAT GTTTGCGGCG CCGACCATGA TCAAGCGGCT GGTCGAGGCC GCCAAGCGTC GCGGCGAAGC CGGCGAGGGG CTGCGCACCA TCGTCTATGG CGGCGGCCCG ATGTATCTCG CCGACATCCG CGAGGCGCTG AGCGTGATGG GCCAGCGTTT CGTGCAGATC TACGGCCAGG GTGAATCGCC GATGACGATC ACCTCGCTGA AGCGCGCGCT GCACGCCGAC GTCGATCATC CACGCTATCT GCAGCGGCTC GCCTCGGTCG GCACCGCGCA GAGCGTGGTG TCGGTGCGGA TCACCGGTGC GAACGGAGAA GTGCTGCCGG CGGGCGAGAC CGGCGAGATC GAGGTCAAGG GCTCAACCGT GATGCTCGGC TATTGGAACA ATCCGCAGGC CAATGCCGAG ACGCTGAAGG ACGGCTGGCT GCGCACCGGC GATGTCGGGC GCCTGGATGA GGACGGCTTC CTGACGCTGT CGGACCGCTC CAAGGACGTC ATCATCTCCG GCGGCACCAA TATCTATCCG CGCGAGGTCG AGGAGGCGCT GCTGACGCAT CCGGCTGTGC GCGAGGTCTC TGCGATCGGC GTCGCAGATC CGGAATGGGG CGAGAACGTC GTCGCCTGCG TTGTGCTCGC CGACGGCGCC GCGGCCGACG ATGCCACGCT CGACGCCCAC TGCCTCGCTA CGATCGCCCG CTTCAAGCGC CCCAAGCGTT ACGTCTATCT CGACGCGCTG CCGAAGAATA ATTACGGCAA GGTGCTGAAG ACGGAACTGC GGAAGATTGT GAAGTAA
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Protein sequence | MNLAEWLAAS ARLRPGAPAL LTGTTVDADY ATFASRAASF GAALARDYGI APGDRVALFA HNCTRYLEAL YGIWWAGAVA IPINAKLHGK EVAWICSNAE ARLALICDDT ADTFNEASCD LPPGLAVLAI DSDGFDRARS GAGSKAPVAR DDDDLAWLFY TSGTTGRPKG VMLSHGNLVA MSLSYLADVD AVTPEDAALY AAPISHGAGL YNMIHVRFGA RHVVPESGGF DPDEVLGLGK QLGNVAMFAA PTMIKRLVEA AKRRGEAGEG LRTIVYGGGP MYLADIREAL SVMGQRFVQI YGQGESPMTI TSLKRALHAD VDHPRYLQRL ASVGTAQSVV SVRITGANGE VLPAGETGEI EVKGSTVMLG YWNNPQANAE TLKDGWLRTG DVGRLDEDGF LTLSDRSKDV IISGGTNIYP REVEEALLTH PAVREVSAIG VADPEWGENV VACVVLADGA AADDATLDAH CLATIARFKR PKRYVYLDAL PKNNYGKVLK TELRKIVK
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