Gene Rpal_3902 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3902 
Symbol 
ID6411582 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp4189257 
End bp4189877 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content63% 
IMG OID642713784 
Producttransglutaminase family protein cysteine peptidase BTLCP 
Protein accessionYP_001992875 
Protein GI192292270 
COG category[S] Function unknown 
COG ID[COG3672] Predicted periplasmic protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGGGCA ACAGGGGATT TCGGGGGCTT GCGGTGATTG CCGCCGTCGT CGCACTGACC 
GCGACGGCGC AAGCCGAAGA CAGGGTTCGC TACGCCAGCG TCGGAGACGA GACGCGTGCA 
CCGATCGGCT GGATCGAGTT CTGCTCGGAC AATCCGGTGG AATGCCGCGG CAGCCGCAGC 
CAGGCACGGG ACATCGTGCT GACGCAGACT GCTTGGCAGG ATCTACTGAA AGTCAATCGC 
TGGGTCAACG ACACCATCAA GCCGCTGACC GACATGGACC ACTGGGGCGT GATCGAAAAG 
TGGTCACTGC CGAGCGACGG TTACGGCGAT TGTGAAGACT ACGTACTGCT GAAGCGCAAG 
ATGCTGATCG ACGCCGGCTG GCCGCGCGAA GCGCTGCTGA TCACCGTGGT CCGCGACAAG 
AAGAACGAAG GTCACGCGGT GCTGACGGTG AAGACCGACA AGGGCGAGTT CATCCTCGAC 
AACCAGAACG AGGAAGTCGT CGCCTGGACC GAGACTGGCT ACCGCTTCGT CAAGCGACAG 
TCGCAGAGCG ATCCCAATGC CTGGGTCGCA CTCGGCGATG GTCGCCCGGC AATCGCAACC 
GCCAGCGCCA AGCAGCGCTG A
 
Protein sequence
MSGNRGFRGL AVIAAVVALT ATAQAEDRVR YASVGDETRA PIGWIEFCSD NPVECRGSRS 
QARDIVLTQT AWQDLLKVNR WVNDTIKPLT DMDHWGVIEK WSLPSDGYGD CEDYVLLKRK 
MLIDAGWPRE ALLITVVRDK KNEGHAVLTV KTDKGEFILD NQNEEVVAWT ETGYRFVKRQ 
SQSDPNAWVA LGDGRPAIAT ASAKQR