Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_3898 |
Symbol | |
ID | 6411578 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 4185316 |
End bp | 4186086 |
Gene Length | 771 bp |
Protein Length | 256 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642713780 |
Product | Rhomboid family protein |
Protein accession | YP_001992871 |
Protein GI | 192292266 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGATTCTC CGCTCGTATC GTCGTCGTTG CCGCCGGAGC CGCCGCAGCC GCAGCGCGAG CCGATTCTAA CGCTGCCCGG GGCGGTGACG GCCTACGTTG CGCTGCTGTC GGTGATCCAT CTGCGCACGC TGCTCTCGCC GGAGTTCGAG TACTGGACCA TCGAGATGTT CGGCTTCATC CCGATGCGTT ACGAGCAGAC GCTGCTCGAC TCGCCGTTCC CCGGCGGCAC CGGGGCGAAG ATCTGGACCT TCGTCACCTA TTCGCTGCTC CACGCCAATC TCAGCCACAT CGTGTTCAAC GTGCTGTGGC TGCTACCGTT CGGCAGCGCG CTGGCGCGGC GGTTCGGCAG CCTGCGGTTC TTCGTGTTCA TGGCGGTGAC GGCGGCGGCC GGCGCGTTCG CGCATCTGCT CACCCATTCC AACGACGTTG CTCCGATGAT CGGCGCGTCG GCCTCGGTGT CTGGTGCGAT GGCGGCGGCG ATCCGCTTCG CCTTCGTCCG CGGCAGTTTC CTGTCGCTGC GCCGCGGAGA CGCGGATGCG GCCGCGAAGG TGCCTGCGCA GCCGCTGCTG AGGGCGCTGC GCGATCCGCG GGTGCTGGCG TTCCTTGGTA TTTGGTTCGG CATCAACATC ATCTTCGGGA TCGGCTCGAT TGCGATCGGC AACGAGGGCG CCAGTGTCGC CTGGCAGGCG CATATCGGCG GCTTCTTTGC AGGGCTGCTG CTGTTCTCGT TGTTCGATCC GGTGCCGCGG GTCCCTGACG CGCGCGCCTG A
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Protein sequence | MDSPLVSSSL PPEPPQPQRE PILTLPGAVT AYVALLSVIH LRTLLSPEFE YWTIEMFGFI PMRYEQTLLD SPFPGGTGAK IWTFVTYSLL HANLSHIVFN VLWLLPFGSA LARRFGSLRF FVFMAVTAAA GAFAHLLTHS NDVAPMIGAS ASVSGAMAAA IRFAFVRGSF LSLRRGDADA AAKVPAQPLL RALRDPRVLA FLGIWFGINI IFGIGSIAIG NEGASVAWQA HIGGFFAGLL LFSLFDPVPR VPDARA
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