Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_3134 |
Symbol | |
ID | 6410805 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 3380410 |
End bp | 3381198 |
Gene Length | 789 bp |
Protein Length | 262 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642713014 |
Product | alanine racemase domain protein |
Protein accession | YP_001992115 |
Protein GI | 192291510 |
COG category | [R] General function prediction only |
COG ID | [COG0325] Predicted enzyme with a TIM-barrel fold |
TIGRFAM ID | [TIGR00044] pyridoxal phosphate enzyme, YggS family |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTGCCA GTCCCGACCT CTTGCCGGAC GAGATCGCCC GTTTCGGCAC TGATCCCGCC GCGGCCTTTG CGGCGAACCT GACGTCGGTT CAGGAGCGGA TCGCGGCCGC TTGCCATCGC TGCGGGCGAA GCGCCGGTGA GGTGCGTCTT TTGCCTGTCA CGAAGACAGT GCCGGCCGGT GTGCTTCGCC GGGCCTATGC GGCCGGGATC TCAGAATTTA GCGAAAACAA GCTACAGGAG GCCCGCGACA AGCGCGACAT CCTGGCGGAT CTGCCGATCC GCTGGTCGAT CATCGGCCAC CTTCAGACCA ACAAGGTGAA GTACCTCGTT CGGTTTGCGG CTGAATTCCA TGCACTCGAC AGTCTGCGGC TCGCCGATGA ACTCAATCGT CGGCTGGATG CGGAGGGACG CGATCTCGAC GTGTTCGTGC AGGTCAACAC CTCGGGCGAG GCGAGCAAGT ACGGTCTTGC TCCCTGTGAC CTCGTTCCCT TCATCGAGCG TCTGTCCGAC TATCCGCGGC TCAAGCCGCG CGGTCTGATG ACGCTGGCAA TCTTCAGTGC CGAGACCGAA CGCGTCCGCG GCTGCTTCCG GCTGCTGCGG GATCTGCGTG ATCGCGCGAT ACGCGTTCAT CCCGACCTGA CCGAATTGTC GATGGGCATG TCGGGTGATT TCGAGTTCGC GATCGAGGAG GGGGCGACCG TGGTGCGGGT CGGACAGGCG ATCTTTGGCG CACGGCCGAC CACCGACAGG TTCTACTGGC CACACGCAAG CGTCGACCGA GGATCCTGA
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Protein sequence | MPASPDLLPD EIARFGTDPA AAFAANLTSV QERIAAACHR CGRSAGEVRL LPVTKTVPAG VLRRAYAAGI SEFSENKLQE ARDKRDILAD LPIRWSIIGH LQTNKVKYLV RFAAEFHALD SLRLADELNR RLDAEGRDLD VFVQVNTSGE ASKYGLAPCD LVPFIERLSD YPRLKPRGLM TLAIFSAETE RVRGCFRLLR DLRDRAIRVH PDLTELSMGM SGDFEFAIEE GATVVRVGQA IFGARPTTDR FYWPHASVDR GS
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