| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3108 |
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| Symbol | |
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| ID | 6410779 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 3351445 |
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| End bp | 3352680 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642712988 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001992089 |
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| Protein GI | 192291484 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGCTCG ACATTTCGAC GTTGTTTCTA GTTGCGACTC TGATCTGTGC GCTGCTCGGT
GTGATGCTGC ACTATTTCGG CCGCCAGGAG AAAATGCCGG CATTGAACTG GTGGGGGAAC
GCCTACCTGC TCGGGGCCAT CACGGTGGCG CTGTGGACGA TCCTCAGTCC GATCTTCGGC
GAAGCGATCA CGCTGGCGAT GGCCAGCATA GGTTTCATCG CCTGCGGCAT GATGTGGAAC
GCGGCACGCG TCTTCCACGG CCTGAAGCCG AACTGGCCCG GCCTGTTCCT GGGCGCGCTG
GCCTGGCTCG CCGCCGTCGC CAGCCTGCCG CCCGAGCAGG AAGCGCTGAG GATGACGATC
GGCGCCGCGA TCGTCGCTGC CTATGCCGGT CTGACCGCCA GCCAGCTCGC CGCCGAGCGG
CGCAAGTCGA TGCATCGCCG CTGGCCGACT ATCGTGGTGC CGCTGCTGCA CGGCGCCGCC
TTGATGCTGC CGATCGTGCT CGCCGATCTT TGGCCGTCAC CGCATTCCGG CTTCGCCGGC
AACGTCTGGG TGGTACTGTT TGCGGTGGAA CTGGTGCTGT ATGCGATCGG CACTGTGTTC
GTGATCTTCA TGCTGGTGTC CGAACGCTCG GTCAGCCTGC ACAAGACGGC CGCATCTCTG
GACCCGCTGA CCGGCATGCT CAACCGCCGC GGCTTCTCCG AAGCGTGCGC GCGGATGATC
GAACGCGAAG CCATGGCCGG CCGGCCAGTG TCGGCACTGA TCTTCGACAT CGACCACTTC
AAATCGATCA ACGACCGGTT CGGTCATCCG GCCGGAGACG AAGTGCTGAA GCTGTTTGCC
GCCATCGTTA CCAATTCGCT ACGGATCTCG GATCTGTCGG GCCGGATCGG CGGTGAGGAG
TTCGCCGCGC TGCTGCCGTG CCCGATCGAC GAGGCGGTGA CCGCCGCCGA CCGGGTGCGC
GAGGCGTTCC AGAACTGCGG CATCGAGGTC GACGACGCGC CGGTGGCGAC CACGGTATCG
ATCGGCGTCG CCGGTGGGCC GGCCGCTGTC GAACTCGAGG TGCTGCTCGC CGCGGCCGAC
ACCGCGCTAT ATCAAGCCAA ACGGGGAGGC CGGAACCGCG TTGTTGCAAC CGTGGAACAG
CCGGTTTCGC TCGAGGAAAG CCGGCGCAAG GCGGCACAGA CGCGCGAGCA TCAGGTCGTC
GCGCGAGGCA GCGAGGTTGG GCAGGCGGTG GCCTGA
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| Protein sequence | MSLDISTLFL VATLICALLG VMLHYFGRQE KMPALNWWGN AYLLGAITVA LWTILSPIFG
EAITLAMASI GFIACGMMWN AARVFHGLKP NWPGLFLGAL AWLAAVASLP PEQEALRMTI
GAAIVAAYAG LTASQLAAER RKSMHRRWPT IVVPLLHGAA LMLPIVLADL WPSPHSGFAG
NVWVVLFAVE LVLYAIGTVF VIFMLVSERS VSLHKTAASL DPLTGMLNRR GFSEACARMI
EREAMAGRPV SALIFDIDHF KSINDRFGHP AGDEVLKLFA AIVTNSLRIS DLSGRIGGEE
FAALLPCPID EAVTAADRVR EAFQNCGIEV DDAPVATTVS IGVAGGPAAV ELEVLLAAAD
TALYQAKRGG RNRVVATVEQ PVSLEESRRK AAQTREHQVV ARGSEVGQAV A
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