Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_2787 |
Symbol | |
ID | 6410451 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 3030382 |
End bp | 3032223 |
Gene Length | 1842 bp |
Protein Length | 613 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 642712663 |
Product | single-stranded-DNA-specific exonuclease RecJ |
Protein accession | YP_001991771 |
Protein GI | 192291166 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGCCTC CCATCTCCGT TTTGCCGGCC GAGACCGTGC CGGCGTTTCT CGGCGTGACC CGCTCGGCCA CCGGCAAGGC GTGGCGCGAC CGGCTCGATG CCCGCGCCAC CGCCAAAGCG CAGGCGATGG TGCAGCGTTA TCAATTGCCC GAAATGCTGG CGCGGGTGCT GGCCGGGCGC GGTGTGGAGA TCGACCAGGT CGAGGACTTC CTCGACCCGA CCATCCGCAA GCTGATGCCC GATCCGGCGT CGCTGACCCA GATGGAAGCC GGCGCCAAAC GGATCGCGGA TGCCGCCTCG CGCGGCGAGA AGGTGGCGAT CTTCGGCGAC TACGACGTCG ACGGCGCGAC GTCGTCGGCG CTGCTCGCCT GGCATCTGCG CCACTGCGGG CTCGATCCTT TGATCCACAT TCCGGATCGC ATCTTCGAAG GCTACGGCCC GAACATCGAC GCGATCCGCA TGCTCGCCGG CAAAGGCGCG ACGCTGCTGA TCACCGTGGA CTGCGGCACC ACCAGCCTGG AGCCGCTCGC GGAAGCGCGG CGGCTCGGGA TGAGCGTGGT GGTGATCGAT CATCACCAAT GCGGCGACGA GCTGCCGGAC GTTGATGCGT TGATCAATCC GAACCGGCCC GACGACCTGT CCGGGCTCGG CCATCTTGCC GCGGTCGGCC TGGTGCTGAT GACGCTGGTC GCGGTCAATC GCGAGCTGCG GCATCGCGGG TTCTGGACCA CCGAGCGGCC GGAACCGAAC CTGCTCGACA TGCTCCACCA CGTCGCGCTC GGCACAGTGG CGGACGTCGC GCCGCTGGTC GGGCTCAACC GCGCGTTCGT CGCCAAAGGC CTGATCGCGA TGCGTCGCCG CGACCATGTC GGCCATACCG CGCTGATGGA CGTTTCGCGG TTGAACGGTC CGCCGGAGGC GTGGCATCTC GGCTTCATGC TGGGGCCGCG CATCAACGCT GGCGGACGCA TCGGCCGCGC CGATCTCGGC GTCCGGCTGC TGCTCGAATC CGACGTCTCT GAGGCCGCCC GGATCGCGGC CGAGCTCGAT CGGCTCAACA GCGAGCGCCG CGAGATCGAA CAGAAAGCCG AAGCCCAGGC GGAAGCCGAG GCGATGGCCT CGCTCGGGCT CGAGGACAAG GGCGCAGTGA TCGTCACGGC TTCCGAAGGT TGGCACCCCG GCGTGGTCGG GCTGGTCGCT TCGCGGCTGA AGGAGAAGTT CGGCCGGCCG TCGTTTGCGA TCGCGCTGGA GCCGGGCGGC ATCGGCACCG GTTCGGGCCG CTCGATCTCC GGCGTCGATC TTGGCAAGGC GGTGCGCCAG GCGGTGCATG ACGGGCTGCT GCTGAAGGGC GGCGGTCACG CCATGGCGGC CGGTGTGACG TTGCGAAAAG AACGGCTCGC CGAATTCCGC GCCTGGCTGG AGACGACGCT TGCCGGCGAC GTCGCCAAGT CGCGCCACGT CAACGAGCTG TACATCGACG GCGCGGTGTC GGCGCGCGGC GTCACGACAG AACTGGCGGC GACGCTGAAC CGGGCAGGGC CATTCGGTGC CGGCAATCCG GAGCCGATCG TGGCGCTGCC GGCGCATCAG CTGATCTACG CCGACGAAGT CGGGCAGGCG CATCTGCGGC TGCGCTTCAA GGCGGGGGAC GGCGCGATCG TCAACGGCAT CGCGTTTCGC AGCGTCGGCC AGAAGCTCGG CAATGCGCTG ACCGAGAACC GCGGCCAGAC GCTCCACGTC GCCGGCAGCC TCAGCGTCGA CCGCTGGCAG GGTGCCGAGC GGGTGCAGCT CCGCGTCATC GACGTCGCGG TGCCGGATGC AGGGCCGACG ATGATCAGGT GA
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Protein sequence | MTPPISVLPA ETVPAFLGVT RSATGKAWRD RLDARATAKA QAMVQRYQLP EMLARVLAGR GVEIDQVEDF LDPTIRKLMP DPASLTQMEA GAKRIADAAS RGEKVAIFGD YDVDGATSSA LLAWHLRHCG LDPLIHIPDR IFEGYGPNID AIRMLAGKGA TLLITVDCGT TSLEPLAEAR RLGMSVVVID HHQCGDELPD VDALINPNRP DDLSGLGHLA AVGLVLMTLV AVNRELRHRG FWTTERPEPN LLDMLHHVAL GTVADVAPLV GLNRAFVAKG LIAMRRRDHV GHTALMDVSR LNGPPEAWHL GFMLGPRINA GGRIGRADLG VRLLLESDVS EAARIAAELD RLNSERREIE QKAEAQAEAE AMASLGLEDK GAVIVTASEG WHPGVVGLVA SRLKEKFGRP SFAIALEPGG IGTGSGRSIS GVDLGKAVRQ AVHDGLLLKG GGHAMAAGVT LRKERLAEFR AWLETTLAGD VAKSRHVNEL YIDGAVSARG VTTELAATLN RAGPFGAGNP EPIVALPAHQ LIYADEVGQA HLRLRFKAGD GAIVNGIAFR SVGQKLGNAL TENRGQTLHV AGSLSVDRWQ GAERVQLRVI DVAVPDAGPT MIR
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