Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_2330 |
Symbol | |
ID | 6409991 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 2514112 |
End bp | 2514834 |
Gene Length | 723 bp |
Protein Length | 240 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 642712212 |
Product | transcriptional regulator, LuxR family |
Protein accession | YP_001991323 |
Protein GI | 192290718 |
COG category | [K] Transcription |
COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.20021 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGCGGC GCGCCTTGGA CGAAACACTT CACTTTGTCG GTAACGTGGA GCGCGCGGAC ACACCCGACG CCGTCGCGCT GGCGTTGTTG GCCGCCGTGC AGGTTCATGG CTTCTCGCAC GTGATCGCGG GCGTTATCCC GACTCCCGGC ACATCGGCCA AAGAGCAGAT CGCGAACGTT GTACTTCATC AATGGCCAGA TGTTTGGAGC CGGCGCTACT TCTCAAAGGG GTATATTTTC ACCGATCCAG CAATTCGGAG GGTAACGAGC TCTATGGTCC CGTTTTCCTG GACCGAGCTT TGGGATCACG ATTCGCCGGC AGGCCACCGC ATCCTCGGGG AGGCTGCCGA GTTCGGGCTC AAGGAGGGCT TCACCGTGCC GATGGTAACG TTGGACGGTC ATTCGGCAGG TCTCTCGATC GCGGGGGCGA TGACCGAACT GCCGCCGCAC CTCAGAGGGC CAGTGCAGAT GATGGCGATC TATTCATTCG CCCGCGCCGC GCATCTGAGA GAGCGGCCGC CCGCCCCCGT CACTCTCACG ATCCGAGAGG CCGACGTCCT TCACTGGATC GCCGAAGGCA AAACCGATTG GGAGATAGCA CGAATACTTC AGGTGTCGGA ACACCTCGTT GATAAAGTGG CCCGGCAGAT CAAATCGAAA TTTCAAGTTG TGAATCGGGT CCAGGCGGTC GTTCAAGCGA TGCGAGCCGG CGTGATTCAC TAA
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Protein sequence | MSRRALDETL HFVGNVERAD TPDAVALALL AAVQVHGFSH VIAGVIPTPG TSAKEQIANV VLHQWPDVWS RRYFSKGYIF TDPAIRRVTS SMVPFSWTEL WDHDSPAGHR ILGEAAEFGL KEGFTVPMVT LDGHSAGLSI AGAMTELPPH LRGPVQMMAI YSFARAAHLR ERPPAPVTLT IREADVLHWI AEGKTDWEIA RILQVSEHLV DKVARQIKSK FQVVNRVQAV VQAMRAGVIH
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