Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_2010 |
Symbol | |
ID | 6409670 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 2179064 |
End bp | 2180302 |
Gene Length | 1239 bp |
Protein Length | 412 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642711896 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_001991008 |
Protein GI | 192290403 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.2279 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCGAAC ATTTTCTTCG AAATCTGCGT CTTCGGCGCA CCTGGTGGAT CGCGGCTGCG TGCGTTGCGG CCGGCGTTGC TGTGGGTGGT TACGAGCTGG CAAAGTTCGA GCAACCCGGT CGTGGCCACA CCGATATTTC CAGCCAGTCG CGCCGCAGTG CCGACCGCTA CACCCCGACT CCGGCAGAAT GGGCCAGCCT GACGATCGAG CCGGTCAGTG ACCGCAGCTT CCGCGCCGAG CACGTCACCG AAGGCAAGAT CGCGATCGAC GAAGACCGCG CCACCCCGGT GTTCTCGCCC TATGCGGGCC GCGTGACCAA GCTGCTGGCG CGCCCCGGTG ACCACGTCAC CAAGGGTCAG CCGCTGTTCT CGATCGAAGC GCCGGACACC GTCCAGGCCC AGAACGATTT CATCACCGCT TCGACCGCGC TCAACAAGGC GAAGTCGCAG CTCGATCTGG CGCAGCTTCA GGACAAACGG GCCCGCGATC TGTTCGAAGG CAAGGCGGTG CCGCTGAAGG ACTATCAGCA GGCCCAGGCC ACGCTGATCA CCGCGCAGAA CGATTTCCAG TCGGCCACCA CAGCGCTCGA GGCCGCGCGG AACAGGCTGC GTATTCTCGG CCTGAGCGAG TCCGCGATCT CTGCCTTCCA GAACAAAGGC AATATCAATC CCGAGACCAC CATCGTGGCG CCGATCGCGG GCACCGTGGT TCAGCGCAAG GTCGGTCCGG GCCAATATGT CAACGCCGGC TCCAGCGATC CCGTCTACAT GATCGGCGAT CTGTCGACGG TGTGGCTGAC CGCCTTCGTC CGCGAAAGCG AAGCCGCCGA TGTTGCTGAA GGCCAGGACA TCAGCTTCAA GGTGTTGGCG CTGCCGGGCC GCACGCTGAC GGGCCGAATC GACTACGTCT CCGCGGCGAT TGACCCGACC ACCCGCCGGC TGACGGTGCG CGCCACCATC GACAATCCTG GCGGGCTGCT GAAGCCGGAG ATGTTCGCCA ACGTCACGAT CTACTCGCCG TCGGATCATC CGGCCGTCGG CGTGCCACGC CAGGCGCTCA TCTACGAAGG TGACCAGGTC CGCGTCTGGG TCGCGCATGA CGACCGCTCG ATCGAGCTGC GCACGGTGAA GCCGGGCCTG TCGGCCGGCG ATCTGGTCGA AGTCACCGGC AACCTGCGTC CGGGCGAAAA GGTCATCACC CGGGGCAGCC TGTTCATTGA TCGGGCTGCC ACCGGGTAA
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Protein sequence | MREHFLRNLR LRRTWWIAAA CVAAGVAVGG YELAKFEQPG RGHTDISSQS RRSADRYTPT PAEWASLTIE PVSDRSFRAE HVTEGKIAID EDRATPVFSP YAGRVTKLLA RPGDHVTKGQ PLFSIEAPDT VQAQNDFITA STALNKAKSQ LDLAQLQDKR ARDLFEGKAV PLKDYQQAQA TLITAQNDFQ SATTALEAAR NRLRILGLSE SAISAFQNKG NINPETTIVA PIAGTVVQRK VGPGQYVNAG SSDPVYMIGD LSTVWLTAFV RESEAADVAE GQDISFKVLA LPGRTLTGRI DYVSAAIDPT TRRLTVRATI DNPGGLLKPE MFANVTIYSP SDHPAVGVPR QALIYEGDQV RVWVAHDDRS IELRTVKPGL SAGDLVEVTG NLRPGEKVIT RGSLFIDRAA TG
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