Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_2001 |
Symbol | |
ID | 6409661 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 2164920 |
End bp | 2166155 |
Gene Length | 1236 bp |
Protein Length | 411 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642711887 |
Product | Extracellular ligand-binding receptor |
Protein accession | YP_001990999 |
Protein GI | 192290394 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTTCCC TGTCCCGTTC GATCGCCGCC GTCGCGGCCG TCGCGCTGCT GTCCGCCACC GGCGGGCAAG CGCTGGCGCA AAAGAAATAC GGCCCCGGTG CGAGCGACAC CGAAGTCAAG ATCGGCAACA TCGTGCCGTA TTCCGGCCCC GCCTCGGCCT ATGGCAGCGT CGGCCGGGCG CAGGAAGCCT ACTTCAAGAT GATCAATGAC AAGGGCGGCA TCAACGGCCG CAAGATCGTC TACGTGTCAT ATGACGACGC CTATTCGCCG CCGAAGGCCG TCGAGCAGAC CCGCAAGCTG GTCGAGAGCG ACGAAGTGCT GTTCATGTTC TCGCCGCTCG GAACGCCGTC CAACACCGCG ATCCAGAAGT ATCTCAACGC CAAGAAGGTG CCGCATCTGT TCCTGGCGTC GGGCGCCACC AAGTGGAACG ATCCGAAGCA CTTCCCGTGG ACGATGGGCT GGCTGCCGAG CTACCAGAGC GAAGGTCGAA TCTACGCCAA GTACATCTTG AAGGAGAAGC CGGACGCCAA GATCGCCGTG CTGTATCAGG GCGACGACTT CGGCAAGGAC TATCTGAAGG GCCTCAAGGA CGGTCTCGGT GCCAAGGTGT CGCAGGTCGT GATCGAGGAC AGCTACGAGC TGACCGAGCC GACCGTCGAC TCCCACATCG TCAAGATCAA GGCCGCGAAC CCGGACGTGC TGGTGATCTT CGCCACGCCG AAGTTCGCCG CGCAGACCAT CAAGAAGGTC GCCGAGCTCG CCTGGAAGCC GATGATGATC GTGCCAAACG TCTCGGCCTC CACCGGCAGC GTGATGAAGC CGGCCGGCTT CGAAAACGCG CAGGGCATCG TCTCGGCCGC CTACGCCAAG GACGCCACTG ACAAGCAGTG GGAAAATGAC CCGGGCATGA AGGCGTATTA CGAGTTCATG GCCAAGTACG CGCCGGACGC CAGCCGCGCA GACAGCTCGT TCACCACCGG CTACAACATC GCCGAGACCG TGGCGGTGCT GATCAAGCAG TGCGGCGACG ACCTCAGCCG TGAGAACGTG ATGAAGCAGG CGGCGAACCT CAAGGGCGTG CAGCTCGGCG GCCTGCTGCC GGGCGTAACG CTGAACACCT CGCCTACCGA CTTCGCGCCG ATCGAGCAGC TGCAGATGAT GCGGTTCGAA GGCGAAAACT GGAAGCTGTT CGGCGACGTG ATCGAAGGCG AAGTCGCCGC GCCGAGCGGC GGCTAG
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Protein sequence | MSSLSRSIAA VAAVALLSAT GGQALAQKKY GPGASDTEVK IGNIVPYSGP ASAYGSVGRA QEAYFKMIND KGGINGRKIV YVSYDDAYSP PKAVEQTRKL VESDEVLFMF SPLGTPSNTA IQKYLNAKKV PHLFLASGAT KWNDPKHFPW TMGWLPSYQS EGRIYAKYIL KEKPDAKIAV LYQGDDFGKD YLKGLKDGLG AKVSQVVIED SYELTEPTVD SHIVKIKAAN PDVLVIFATP KFAAQTIKKV AELAWKPMMI VPNVSASTGS VMKPAGFENA QGIVSAAYAK DATDKQWEND PGMKAYYEFM AKYAPDASRA DSSFTTGYNI AETVAVLIKQ CGDDLSRENV MKQAANLKGV QLGGLLPGVT LNTSPTDFAP IEQLQMMRFE GENWKLFGDV IEGEVAAPSG G
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