| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1481 |
|---|
| Symbol | |
|---|
| ID | 6409138 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 1562199 |
|---|
| End bp | 1564295 |
|---|
| Gene Length | 2097 bp |
|---|
| Protein Length | 698 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642711380 |
|---|
| Product | RNA polymerase sigma factor RpoD |
|---|
| Protein accession | YP_001990496 |
|---|
| Protein GI | 192289891 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAGCA AGGCGAAGAC GGTTCAGGTG CAGGACAAGG ACAAGGACGA CAAGGTAGAC
GCGCCGGAGA AGGACTCCGT CGACGCTCCC TCGCCGCTCC TCGACCTGTC GGATGCGGCC
GTCAAGAAGA TGATCAAGCA GGCGAAGAAG CGCGGCTTCG TCACCTTCGA TCAGCTCAAT
GAAGTGCTGC CCTCCGACAC CACGTCGCCG GAGCAGATCG AAGACATCAT GTCGATGCTG
TCCGACATGG GCATCAATGT GTCCGAGGCG GAAGACACCG AGGCCGAAGA GGAAGAGGCC
AAGGAAGAGG CCGACGAGGA GCTCGACAAC GATCTGGTTG AGGTCACCGC CAAGGCCGTT
ACCGAGACCA AGAAGTCCGA GCCCGGCGAG CGCACCGACG ATCCCGTCCG CATGTACTTG
CGCGAGATGG GCACCGTCGA GCTGTTGTCG CGCGAGGGCG AAATCGCCAT CGCCAAGCGG
ATCGAAGCCG GCCGCGAGGC GATGATCGCC GGGCTGTGCG AAAGCCCGCT GACCTTCCAG
GCGATCATCA TCTGGCGCGA CGAACTCAAC GAAGGAAAGA TCTTCCTTCG CGACATCATC
GATCTCGAAG CCACCTACGC CGGCCCCGAA GGCAAGAACA ACATCGGCGA GCCCGGTGAG
GAAGCCGCGG CCGAAGGCGA CGGCGGTGCG CCCGCGCATG TCGCGCCGCC GGCGGCTCCG
CCGTCCGCCA CCCCGTTCCG TCCCGCGCAG CAGCGCGGCG CCGCGCCGGC CGAAGCCGAG
GGCGAAGGCG CGCCCGAGGG CGATGGCGAC GACGACGAGT TCGAGAACCA GATGTCGCTC
GCCGCGATCG AGGCCGAGCT GAAGCCGAAG GTCGTTGAGA CCTTTGACAA GATCGCCGAC
AACTACAAGA AGCTGCGCAA GCTGCAGGAG CAGGACATCG CCAACCAGCT GCAGAACGAG
CAGCTGTCGC CGTCGCAGGA GCGCAAGTAC AAGAAGCTGA AGGACGAAAT CATCGTCGAG
GTGAAGTCGC TGCGCCTCAA TCAGGCCCGT ATCGACAGCC TGGTCGAGCA GCTCTACGAC
ATCAACAAGA AGCTGGTGTC GTTCGAGAGC CGCTTGATGC GGCTCGCCGA CAGCCACGGC
GTCGCCCGTG ACGACTTCCT GCGCAACTAT CAGGGTTCCG AGCTCGATCC GCGCTGGCTC
AACCGGGTGT CGAAGCTTTC GGCCAAGGGC TGGAAAAACT TCGTCCACCA CGAGAAGGAC
CGGATCAAGG ACCTGCGCCA GGAAGTGCAG TCGATGGCGG CGCTCACCGG TCTCGAGATC
GGCGAATTCC GCAAGATCGT CCACTCGGTG CAGAAGGGCG AGCGCGAAGC CCGTCAGGCC
AAGAAGGAAA TGGTCGAGGC CAACCTCCGC CTCGTGATCT CGATCGCCAA GAAGTACACA
AACCGCGGCC TGCAGTTCCT CGATCTCATT CAGGAAGGCA ACATCGGCCT GATGAAGGCG
GTCGACAAGT TCGAGTATCG CCGCGGCTAC AAGTTCTCGA CCTACGCCAC CTGGTGGATC
CGGCAGGCGA TCACCCGCTC GATCGCCGAC CAGGCCCGCA CCATCCGCAT CCCGGTGCAC
ATGATCGAGA CGATCAACAA GATCGTCCGC ACCTCGCGGC AGATGCTCAA CGAGATCGGC
CGCGAGCCGA CCCCGGAAGA GCTCGCCGAG AAGCTCGGCA TGCCGCTGGA GAAGGTCCGC
AAGGTCCTGA AGATCGCCAA GGAGCCGCTG TCGCTCGAAA CCCCGGTGGG TGACGAAGAG
GACAGCCATC TCGGCGATTT CATCGAGGAC AAGAACGCGG TGTTGCCGAT CGACGCCGCG
ATCCAGTCGA ACCTGCGCGA GACCACCACG CGCGTGCTCG CCTCGCTCAC CCCGCGCGAA
GAACGCGTGC TGCGCATGCG CTTCGGCATC GGCATGAACA CCGACCACAC GCTGGAAGAA
GTCGGCCAGC AGTTCTCGGT GACTCGCGAG CGCATCCGCC AGATCGAAGC GAAAGCGCTG
CGGAAGTTGA AGCATCCGAG CCGGTCGAGG AAGCTGCGAA GCTTCCTGGA TAACTAA
|
|---|
| Protein sequence | MASKAKTVQV QDKDKDDKVD APEKDSVDAP SPLLDLSDAA VKKMIKQAKK RGFVTFDQLN
EVLPSDTTSP EQIEDIMSML SDMGINVSEA EDTEAEEEEA KEEADEELDN DLVEVTAKAV
TETKKSEPGE RTDDPVRMYL REMGTVELLS REGEIAIAKR IEAGREAMIA GLCESPLTFQ
AIIIWRDELN EGKIFLRDII DLEATYAGPE GKNNIGEPGE EAAAEGDGGA PAHVAPPAAP
PSATPFRPAQ QRGAAPAEAE GEGAPEGDGD DDEFENQMSL AAIEAELKPK VVETFDKIAD
NYKKLRKLQE QDIANQLQNE QLSPSQERKY KKLKDEIIVE VKSLRLNQAR IDSLVEQLYD
INKKLVSFES RLMRLADSHG VARDDFLRNY QGSELDPRWL NRVSKLSAKG WKNFVHHEKD
RIKDLRQEVQ SMAALTGLEI GEFRKIVHSV QKGEREARQA KKEMVEANLR LVISIAKKYT
NRGLQFLDLI QEGNIGLMKA VDKFEYRRGY KFSTYATWWI RQAITRSIAD QARTIRIPVH
MIETINKIVR TSRQMLNEIG REPTPEELAE KLGMPLEKVR KVLKIAKEPL SLETPVGDEE
DSHLGDFIED KNAVLPIDAA IQSNLRETTT RVLASLTPRE ERVLRMRFGI GMNTDHTLEE
VGQQFSVTRE RIRQIEAKAL RKLKHPSRSR KLRSFLDN
|
|---|
| |