Gene Rpal_1114 details

Gene Information

• Locus tag: Rpal_1114
• ID: 6408770
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: -
• Start bp: 1180059
• End bp: 1183502
• Gene Length: 3444 bp
• Protein Length: 1147 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 642711016
• Product: TPR repeat-containing protein
• Protein accession: YP_001990133
• Protein GI: 192289528

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.0258591
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGAGGTTT GCTCCTCCAC GCCACACCTA TGTCTGACTG ATTTTTCGAA TCGCACCGCA 
CAAGTTCGTG AGAGCAAGTC GGACCTCGCA CTTCTAAGCC CGCATCGGTC AGACGTAATT 
CCATTATTGG GACGCGAATT AGTCATAGCC AATATCGAAC AGTGGATGGA ATCCGAGAGC 
CAAGTATCGA TACGAACAAT CGTTGCGAGG GGCGGGGAAG GCAAGACTCG CCTTGCTTCC 
GAAATTGTAA GTCGCGCAAT CCGCGCTGGA TGGCTCGCCG GCTTTGTTGA AATACGCGAG 
CTAAGTCGTT TTGTTAGACA GCCTGATATT TCAAAATGGA AATGGGATAA GCGGACGCTG 
ATTGTCGTCG ATTACGCAGC ACGCGTGGCA CAACAAATCA ATGAGATTCT AGCTGTTCTG 
ATTGATAAGG ATCAAAACTC TCCTCCACTA AGATTATTGT TGCTAGAGCG ACACGCGAAC 
CCCGAGTATG GCTGGTTTCC AACGATATTC GGCCGCGGCG ATAGTGACGC ATCTCTCGCT 
GCGCTACGGC TGATGGACCC ACCCGAACCC GTTACGCTCT CGAGTATAGA CGACGTTTCT 
ATTCGTCGGA CCATCTTCAA GACCATCCTG GCAAGAAAGC GGCCGGACCT AGAATTGTCC 
GCCATTGACA ATGATTCGAC TCTCGAAAAG TCTCTTTTGG ACGAGAAGTG GGCCGGCACC 
CCCCTATACT TAATTATTGC CGGCCTCAAT GCTGGGAGCA TGGGAATTGA GAATTCGCTT 
CGTCTAAATC GAGACGAGAT AGCGATCACC ATCGCAAGAC GGGAGCTAAA TCGCATAGAT 
GAGATAGCGA GAGCGGGTGG CGGCGCACCC GGAAAACTGA TGCCACGTCA TTTGGCGGTG 
TTATCTACTT TGGGTCAGGG GATGCCTCTG AACCAATTGC GAGATTTGGC GAGTGAGGAG 
CGATCAACAA TAGATCCAAC CGCTGACTTA AATGCTTCGA TCGACGCGTT GATGAATGGA 
CTCGATGTGT ATCCGCAGAT GGCTGAGGTG CTACCGCTTG TTCCCGACAT AATCGGGGAG 
GCGGTCGTTC TTGATTGGCT TGGGCGCTAC GGGACACTTG CATCAATCGG AATTGACGGG 
AGATCCTCGA TCGAGCGCGT TTGGAGAAGA AAACCAGAGG AAGTCGCCAA CTTCCTAATT 
CGGACCGTTC AGGATTTCTT TTCCGACGGG CATGAGGAGG CTGAACACTG GCTTCGGCAT 
CTTCTAGAGT TCGAGCCGTT GGATCTGGCG CTCATGAAAC GAATATCTTC GCGCCTGCCC 
TCCGAGACCC TGGGATTGAA AGAAATTGGG TTGAATCTCG CACGTCGGAT TTCATCGGAA 
ATCCAACGCG CGATATCGTC TCAAGATCCT CGAGAAGACG AGTCTCTCCA ATTATTCTCA 
GCTCTGATGT CGCAATGCCA ACGATCATTG ATTTGCAACC TACCCGAGGA ATCGCTCGAA 
TTAGCAACAG AAGCCATTAA TATTCTTCAA GGCTTGAGCG ACGAGACGGG AGAGGCGTTT 
TTGCCTTCGT TGGCTGGTGC TCTGAACAAT AAAGCAGCCG CCCTCATGTT ACTGGATCAA 
GCCAGCGAAG CACTCAAGGC GTGCGATGAA TCAATTTCAA TTCGGTCCTC GCTTGCTGGC 
AAATATCCAT CTATCTTTAA TGCGGATCTA TCTAATACTC TGCACAATCG CGCATTGATT 
TTGCAGCAGC TAAAGCGTCA TTCAGAGGCG CTCGCTGACT GTAGCGAGGC GATCAAACTA 
CGACGGCAAG CGATCGAGTT GGGCGTGGAA GAGCTTTTGC CAGCCCTTGC CTATTCGCTT 
GCAGTTTACT CAGACTGCCT AGCTTCCGAA GCGCGGCATC ACGAGGCGCT TGCTGCAGTA 
CAGGAGTCAT GCGCGATTCT GAGCAAATTA TGCAGAGTTC ATCCAGATGC CTTCAGTTAT 
AGACTCGCGC ATGCCCTCGT GAAGAGCAGA TCGCGATTAC TAGCTGTAGG TCGTTCTGAA 
GAAACAGCAG CGGTTAGCCT AAGCATTGTC GCCCTGTATA GAAGAATCGC GAGCGTCGAT 
CGCGATGTTA GCAACAAAAA GCTCTCGACT CTCGATCTAG CGCGGAGCCT GTCAGCCCTT 
TCAGAGGATC TATATGATTC GGGAAATCTA GACGGCGCAA TAAGCGCGAA AAGCGAGTCG 
GTTGATCTCT ATCACTCCTT GGCATTAGAT GGAGAGAAGG GGCACCCCTC GGAGCTGGCC 
CGTTGTTTGC GGAAACTGAG CGAGCTTCTT TGGTCATGCG GAAGGTTTGA GGAAGCAGAA 
GCCGCGATAA GTGAATCCGT CGCTATATTT AGAGAAATTG CGGAACACGA TTCGACTTTC 
CTTCCTGATC TGGCGGGCAG CCTCGATAAT ATGGGTGTCT GCTTTGGAGC TGCTGGCCGT 
CATAAAGACG CTTTGAATGC TCATCGTGAA TCTGTATTCA TCTTCAAACA ACTGACAGTT 
GACCATCCGA CTGAATATGA GTTTGACCTT GCCGGAAGTA CTTTCAACCT AGCCGCACGT 
CTTTCTGGAT CCGGCCTTGA CGGCGAGGCC TTGGCGGCAC TTAGGGAAGC TGCTGCTCTC 
TATCGGAAAT CCAGCAAGAG TATCCTCAAG ACATTCATGC TTTCCCTCAG TCTCTTACAG 
ATCGGGAGAA CCCTCTTAAA ACTCAACGAC GTTGCTGGAT CGCTTGCTTC GGCGAGCGAG 
TCGATAGGGT ACTGGAGGCA TTTGAATCAG AGCCAATCTG ACCAGGTTCT CCAGAGGTGC 
ATGCATTTCT TACAGGAGGC GAGCCGCATT ATATTGTCCA TTGGAGAAGG TCAAAAAAGA 
CTGGTCCTGC TCCGACGTCT GGTCGACCTA TACGGGAGAT TAGAGAAACA GTTCTCGCAT 
CGACCCTTAC CGGAGCAGGC AAAAGCCGCG CGAGCGCTGG GTGAAGAGCT CATCAGTTGC 
GATCGAACGA AGGATGGATT GGCTGCGCTT CGCGATTCTG CGCGGATCTA TCGACAGTTG 
AACAGCGAAA ACGGCGGCCT TTTCTTAAAA GAGCTTGCAG AGGTCCTCAA TGCAGAGGGA 
TCCGCGCTCT TTAGAATGAA CCGATACCGA AAGGCTCTGC CTGTGAGCAA AGATGTCGTT 
GAGATCTACT GGAGACTGGC TACGGAGAAT CCGACGGTAT TACCGACGCT CGCAGCTTGC 
CTTGCGTCAC TTGACGCCGT GTTGGTTCGC ATGGGGCAAT TCGCGGAAGC CGCGGAAGCA 
AGTCGCGAGG CGTTGGTCGT TTTCGGTCGT ATTGCAACGC CCCTTTCTCT TAGCGAAAAG 
AATCTGCTTC AGTTTCTTCG GATGAACTAT ATAGATTCAT GTGCCCGCGC GGGCATTGTC 
CCGGAAGTCG AAATATTGAA GTAG 

 

Protein sequence

MEVCSSTPHL CLTDFSNRTA QVRESKSDLA LLSPHRSDVI PLLGRELVIA NIEQWMESES 
QVSIRTIVAR GGEGKTRLAS EIVSRAIRAG WLAGFVEIRE LSRFVRQPDI SKWKWDKRTL 
IVVDYAARVA QQINEILAVL IDKDQNSPPL RLLLLERHAN PEYGWFPTIF GRGDSDASLA 
ALRLMDPPEP VTLSSIDDVS IRRTIFKTIL ARKRPDLELS AIDNDSTLEK SLLDEKWAGT 
PLYLIIAGLN AGSMGIENSL RLNRDEIAIT IARRELNRID EIARAGGGAP GKLMPRHLAV 
LSTLGQGMPL NQLRDLASEE RSTIDPTADL NASIDALMNG LDVYPQMAEV LPLVPDIIGE 
AVVLDWLGRY GTLASIGIDG RSSIERVWRR KPEEVANFLI RTVQDFFSDG HEEAEHWLRH 
LLEFEPLDLA LMKRISSRLP SETLGLKEIG LNLARRISSE IQRAISSQDP REDESLQLFS 
ALMSQCQRSL ICNLPEESLE LATEAINILQ GLSDETGEAF LPSLAGALNN KAAALMLLDQ 
ASEALKACDE SISIRSSLAG KYPSIFNADL SNTLHNRALI LQQLKRHSEA LADCSEAIKL 
RRQAIELGVE ELLPALAYSL AVYSDCLASE ARHHEALAAV QESCAILSKL CRVHPDAFSY 
RLAHALVKSR SRLLAVGRSE ETAAVSLSIV ALYRRIASVD RDVSNKKLST LDLARSLSAL 
SEDLYDSGNL DGAISAKSES VDLYHSLALD GEKGHPSELA RCLRKLSELL WSCGRFEEAE 
AAISESVAIF REIAEHDSTF LPDLAGSLDN MGVCFGAAGR HKDALNAHRE SVFIFKQLTV 
DHPTEYEFDL AGSTFNLAAR LSGSGLDGEA LAALREAAAL YRKSSKSILK TFMLSLSLLQ 
IGRTLLKLND VAGSLASASE SIGYWRHLNQ SQSDQVLQRC MHFLQEASRI ILSIGEGQKR 
LVLLRRLVDL YGRLEKQFSH RPLPEQAKAA RALGEELISC DRTKDGLAAL RDSARIYRQL 
NSENGGLFLK ELAEVLNAEG SALFRMNRYR KALPVSKDVV EIYWRLATEN PTVLPTLAAC 
LASLDAVLVR MGQFAEAAEA SREALVVFGR IATPLSLSEK NLLQFLRMNY IDSCARAGIV 
PEVEILK