Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0088 |
Symbol | |
ID | 6407731 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 97634 |
End bp | 98980 |
Gene Length | 1347 bp |
Protein Length | 448 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 642709997 |
Product | Peptidoglycan-binding domain 1 protein |
Protein accession | YP_001989126 |
Protein GI | 192288521 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGATCGA TGCTGGCTGC AACCCTGATC GTCGCCGGTG CCGCCACCCT GCCGGTGCAT GGCGCCCACG CCGCACCGCC GAAACAGGCC GCCGCTGCGC CTCCGGCGGC GCAGACGCCT GCGGAGACCG CCAAAACGCT GGCGCAGGCG GAGCGCCAGG CGATCCAGTC GGATCTTGCC TGGACCGGCG ATTACAACGG CCTGATCAAC GGCGAGGTGT CCGATCGGAT GATCGCGGCG ATCAAGCAGT TCCAGACCAA CCAGGGTCAC AAGCCGACCG GCGTGCTCAA TCCGCAGGAG CGCGGGCAAC TCGCCGCGGC GGCGCGCAAG CTGCAGGCCA GCGTCGGCTG GAAGCTGGTG GCCGATCCGG TCACCGGCGC ACGGATCGGC GTGCCGACCA AACTGGTGCC GCAGCAAGCG TCCGATGCCG GCGGCACCCG CTGGAGTTCC TCCACCGGCA CGATCCAGGT CGCGCTGTCG CGGCGCAAGG AGGCGGACCT CTCGATCGCC AAACTCGCCG AGCAGGAAAA GAAGCAGCCT GGCCGCAAGG TCGAATACAG CGCGGTCCGG CCCGACTTCT TCGTGCTGTC GGGCACCCAG GGTCAGAAGA AGTTCTACAT CCGCGGCAGC TTCAAGAACG CCGAGGTGCG GATCCTCACC GTGATGTACG ATCAGGCCAC CGAAGGCACG ATGCAGCCGG TCGTGGTGGC GATGTCGAGC GCCTACGATC CGTTTCCGGG CGGCGTCCAG GCCGGCCCAC CGCCGCGCAA GAAGGTCGAA TATTCGACCG GCACGATCGT CGGCGCCGAT GGTGCGATCC TGGCCGATCG CGAGGCGGTC GAGGGCTGTC TGTCGATCGT TGTTGCGGGT TACGGTCCTG CCGATCTGGC CGATCGCAGC AAGGAGCACG AGCTGGCGCT GCTGCGGATC TACGGCGCGT CCGAGCTCAA GCCGCTGCCG ATCGGCAGCG GTGCTGCCAA GCCAGGAGCG GTCGAGATCA CCGGCGTCGC CGATCCGCAG AGCCAGGGCG GCGGCGCTGC CGTCACCACC GTCAAGGCGC AGCTCACCGC AGCCGTCACC ACCGACGGTT TGATAGTAAC GCCGCCGCCG AGCCTCGGCT TTTCCGGTGC GCCGGCCCGA GATGCGGACG GGCGTTTCGC GGGGCTGACG ACGCTGCGTC TGCCACTGGT CGCAGGAGCG GCTGAGAGCG CTGCGCCGCC GCAGGCGACC TTGATCACCG CCGACACCGT CCGCAGCTAT CTCACCGGCG TCGGCGTGAA GCCGGTCGAA GGTACCACCA AGGATCCCAA AGCGAGCGTC GTCCGCGTGA TCTGCGTACG GAAGTAA
|
Protein sequence | MRSMLAATLI VAGAATLPVH GAHAAPPKQA AAAPPAAQTP AETAKTLAQA ERQAIQSDLA WTGDYNGLIN GEVSDRMIAA IKQFQTNQGH KPTGVLNPQE RGQLAAAARK LQASVGWKLV ADPVTGARIG VPTKLVPQQA SDAGGTRWSS STGTIQVALS RRKEADLSIA KLAEQEKKQP GRKVEYSAVR PDFFVLSGTQ GQKKFYIRGS FKNAEVRILT VMYDQATEGT MQPVVVAMSS AYDPFPGGVQ AGPPPRKKVE YSTGTIVGAD GAILADREAV EGCLSIVVAG YGPADLADRS KEHELALLRI YGASELKPLP IGSGAAKPGA VEITGVADPQ SQGGGAAVTT VKAQLTAAVT TDGLIVTPPP SLGFSGAPAR DADGRFAGLT TLRLPLVAGA AESAAPPQAT LITADTVRSY LTGVGVKPVE GTTKDPKASV VRVICVRK
|
| |