| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3929 |
|---|
| Symbol | |
|---|
| ID | 5210912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 4916390 |
|---|
| End bp | 4918114 |
|---|
| Gene Length | 1725 bp |
|---|
| Protein Length | 574 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640597525 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001278232 |
|---|
| Protein GI | 148658027 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1479] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0195005 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGTTA TTAACTTCAA CACCGCCAAT ATGACGCTGC GGCAGTTGCT GGGAAACGGC
CTGACCTACC ATGTGCCGCT CTTTCAGCGC GATTATAGCT GGACGCAGGA CGAATGGGAA
GACCTGTGGC AGGATATTCT CAACACCCTG AATGGCACAG AACCGGCGCA CTACATGGGA
TACCTGGTGC TGCAAACGCA GGATCAGAAG CGTTTCAATA TCATCGATGG ACAGCAGCGC
CTGACAACGT TGAGCCTGCT GGCGCTTGCA GTGCTGAAAT GTCTCGATGA TCTGGCGCGA
CGCAACATTC AGCCGGAGGA TAACCGTCGT CGTGCAGAAC AGTTGAGGAA CAGTTTCATC
GGCTATCTTG ACCCGGTTAC GCTCGTTCCG CAGACTAAAT TGACGCTCAA TCGGAACAAC
GATGCATTCT ACCGTGATCG ACTGGTTCCT CTACAACCAT TGCCACAACG TGGATTACGC
TCGTCGGAGC ATCTATTGCG GCGAGGTTTT GAGTGGTTCT ACGGGAAGAT CACTGATGAA
TATGCTACAC GGCAAGATGG TGCTCTTCTG GCAAAGTTTT TGAGCGATGT AGCCGACAAA
CTTTTCTTCA CAGTTATCAC TGTCAATGAT GAACTCAACG CCTTCAAGGT TTTTGAAACA
CTCAATGCAC GTGGTGTTCG CCTCTCACCC ACCGATCTTC TCAAAAACTA TCTCTTTTCA
GTGATCTACC AGAGTGGAGC GCACGAAACG GAGATAGAAG CACTGGAACG GCGCTGGAAC
CGAATGATCG ACCAACTGGG AAGTGAGAGC TTTCCTGCCT TTTTACGAAC GCACTGGAAC
AGTCGTGAGC GTCTCGTGCG CGAGTCAGAA CTCTTCAAAG TCATTCGCTC GGTAACGCCG
GATAGGGGTC AGGTGTTTGA TCTTGTGCGG CGTATGGAAG TTGACGCACC TGTCTACGCT
GCGCTTGCAA ACCCGGAAGA TCGTCTATGG ACTGATCCAC AGCGCCGATA TGTGCGAGAA
CTCCGAATGT TCAGTGTTCG CCAGCCATGG TCGCTCCTGC TTGCCGCATA TCGCGTGTTC
GATGAAGGAG ATTTTACCAG CATCCTGCGT GCTGTCAGTA TTGTTTCGTT TCGTTACAAC
GTCATTGGCA ATATGTTGAC CCATGAGCAG GAGCGAGTAT ACAACGATAT TGCTCAGCGA
ATAAGCAATG GGGAATTGAA GCAATCTTCC GATGTCATAC GCGCTCTCGC ACCGGTGTAT
GTCGATGATG AAACATTCCG TAACGCTTTC GCCAACAAGG TGCTACGAAC AACTTCTTCG
CGTAATCGAC AGGTGGCGCG CTATATTCTT TTTATGCTTG AAGAACAAAT ATCAAACAAT
CACTATGATA TGGATAATCC TGCATACTCG TTAGAGCACA TTTTGCCGGA AAATTCGTCG
GATGGGTGGG AACATTTCGA CGATGAATCG ATTGACGAAT GGATCTACCG TCTCGGCAAT
CTGACCCTGC TGGAAACATC CCTCAACCGC CAGGCAGGAA ATAAACCCTT CGCTGAGAAG
AAACCGGTGT ATATGCAGAG CGCCATTCAG TTAACGCGCG AGGTGGCGGA GCAGAACGAG
AACTGGACCG TTGATCGTCT GGCGGAACGT CAGCGGCGGA TGGCGCGTCT GGCGACAGCA
ATCTGGCGGT TGCCGCAGAT GGATGTGCGC CCGTCACCGA CGTGA
|
|---|
| Protein sequence | MSVINFNTAN MTLRQLLGNG LTYHVPLFQR DYSWTQDEWE DLWQDILNTL NGTEPAHYMG
YLVLQTQDQK RFNIIDGQQR LTTLSLLALA VLKCLDDLAR RNIQPEDNRR RAEQLRNSFI
GYLDPVTLVP QTKLTLNRNN DAFYRDRLVP LQPLPQRGLR SSEHLLRRGF EWFYGKITDE
YATRQDGALL AKFLSDVADK LFFTVITVND ELNAFKVFET LNARGVRLSP TDLLKNYLFS
VIYQSGAHET EIEALERRWN RMIDQLGSES FPAFLRTHWN SRERLVRESE LFKVIRSVTP
DRGQVFDLVR RMEVDAPVYA ALANPEDRLW TDPQRRYVRE LRMFSVRQPW SLLLAAYRVF
DEGDFTSILR AVSIVSFRYN VIGNMLTHEQ ERVYNDIAQR ISNGELKQSS DVIRALAPVY
VDDETFRNAF ANKVLRTTSS RNRQVARYIL FMLEEQISNN HYDMDNPAYS LEHILPENSS
DGWEHFDDES IDEWIYRLGN LTLLETSLNR QAGNKPFAEK KPVYMQSAIQ LTREVAEQNE
NWTVDRLAER QRRMARLATA IWRLPQMDVR PSPT
|
|---|
| |