Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_2504 |
Symbol | |
ID | 5209473 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 3095241 |
End bp | 3096746 |
Gene Length | 1506 bp |
Protein Length | 501 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640596109 |
Product | EmrB/QacA family drug resistance transporter |
Protein accession | YP_001276831 |
Protein GI | 148656626 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.300835 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCAACGC AGCGCACGAT CCTGATCACT GCCGGGCTGA TGCTCAGCCT GTTTCTCGCA TCGATGGAGT CGACGGTTGT CAGCACCGGC ATGCCAACAA TCGTCAGCCA GCTGGGAGGT CTCGAAAGTT ACAGCTGGGT ATTCACCGCT TTCATGCTCG CCTCAACAAC GACCGTTCCG CTGTACGGCA AACTCTCCGA TCTTTTCGGG CGACGACCAG TATTCGTCGC AGCTATGGCG ATCTTTCTGA TCGGATCGGC GCTCTGCGGT CTGGCGGCGA CGATGCCGCA ACTGATCGCC TTCCGCACTA TTCAGGGGAT CGGCGCTGGC GGGTTGCTGC CGCTGGTGTT CATCATCATC GGCGACCTGT TTTCACTGGA GCAGCGCGCC CGGTTGCAAG GGCTGTTTTC GGGAGTATGG GGCATATCGT CGATCACAGG ACCGTTGCTG GGCGGCTTTA TTGTCGATCA GGCGTCGTGG CAGTGGATTT TCTGGATCAA CATCATTCCC GGTCTGGCGG CGACGGCGAT TGTCTGGTTC GCCTGGATCG ATCGCGCGCG CGCCCACGAC GCGCCGCCAC GTTCGATCGA CTACGCCGGA GCATTGCTGC TGACTGCCGG AGCAGTTGCG TTGCTCATGA GCCTGACCGA TCTGAGCGCG TCGTGGGCGC TGCCGACGCT GGCGGGGGCG CTGGCGCTGT TTGGGGCGCT GGTGTGGGTC GAGCGCCGCG CGAGCGATCC GGTGTTGCCG ATTGGGCTGT TCCACGACCG GATGTTCCTG GTTGCCTGCG GTCACGGCAT CCTCGCTGGC TGCGCCGTGT TTGGCGGTGC GACATTCGTG CCCCTGTATG TGCAGGGAGT GTTGGGCACA AGCGCAACCG AGGCAGGAGC GGCGCTTATG CCGATGCTGC TGGCGTGGGT CTTTTCGAGC ATTCTCGGCA CGCGGCTGTT ACTTCGATTG GGATACCACA CTATTGCACT TGCGGGCATG GTGGCGCTGG TTATCGGCGC TTTTCCGCTC ATGTTCCTCG ATACGCAAAC CAACCGTCTA CTGCTGATGA CAAGTCTGGG GTTGATGGGA TTCGGCATGG GCTTTTCGAT CCCGGCGTTC CTGATCGCAG TTCAGAGCAC CGTTGAACGC AGCAAGCTGG GGACAGCCAC CTCGACCCTT CAGTTCAGTC GCAGCATCGG CGGCGCGTTC GGCATTGGCA TCATGGGGGC AATTCTCAGC GCTATTGTGG TCGCACATCT GGTTGCTGCC GGTCTCGATG CCTCTACCTC GCTCAACAGT CTGATCGATT CGCCGGGAAG CGACTCCGCA GTGCAGGCGA TGCTGCGCGA CGCGTTGAGC GCCGGTATCC GCAGCGTGTT CATTGTAGGG TTCATTGCAT CCGTGCTGGG ATTGCTGGTG ACGCTGCTTG CGCCACGCGG GCAGATCGCG CAGATGAGCG CTGAGCGTGA ACGTCGTGAG GGTGTGGTAC ATCCGGCAGC AGAACACGGA CGTTGA
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Protein sequence | MSTQRTILIT AGLMLSLFLA SMESTVVSTG MPTIVSQLGG LESYSWVFTA FMLASTTTVP LYGKLSDLFG RRPVFVAAMA IFLIGSALCG LAATMPQLIA FRTIQGIGAG GLLPLVFIII GDLFSLEQRA RLQGLFSGVW GISSITGPLL GGFIVDQASW QWIFWINIIP GLAATAIVWF AWIDRARAHD APPRSIDYAG ALLLTAGAVA LLMSLTDLSA SWALPTLAGA LALFGALVWV ERRASDPVLP IGLFHDRMFL VACGHGILAG CAVFGGATFV PLYVQGVLGT SATEAGAALM PMLLAWVFSS ILGTRLLLRL GYHTIALAGM VALVIGAFPL MFLDTQTNRL LLMTSLGLMG FGMGFSIPAF LIAVQSTVER SKLGTATSTL QFSRSIGGAF GIGIMGAILS AIVVAHLVAA GLDASTSLNS LIDSPGSDSA VQAMLRDALS AGIRSVFIVG FIASVLGLLV TLLAPRGQIA QMSAERERRE GVVHPAAEHG R
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