| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1063 |
|---|
| Symbol | |
|---|
| ID | 5208009 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 1301583 |
|---|
| End bp | 1302806 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640594677 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001275422 |
|---|
| Protein GI | 148655217 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACGCT GGCAGCAGAC GCTCTTCATC CTGGTTGCCG CCCAACTGGT ATCAGCCGTC
GGCTTCGGTA TGTTCTTCCC GTTCCTGCCG TTGTATGTCG AGCGCCTCGG TACGAACACC
GGCTTCAGCC TCGAATTCTG GGCGGGGATG GTTTTTTCGG GGCAGGCGCT CACCATGGCG
ATCAGTTCAC CGATCTGGGG ATCGCTGGCG GATCGCTTCG GGCGCAAAGC GATGATCGAG
CGTGCCATGT ACGGTGGCGC TGTGATTATC TTGCTGATGG GTTTTGCCCG TTCGGCGGAA
GAACTGGCGC TGTTGCGCGC CATCCAGGGC GCTATCACCG GAACCATTGC GGCGATCAAT
GCGCTCACCG CCTCGCTCGT GCCACGTGAA CGGGTCGGGT ACGCCATGGG GATGCTTCAG
GTCGGGTTAT GGGCAGGGAT CGCTGCCGGT CCTATGCTTG GCGGCGTTGT CGCCGACCTG
CTCGGCTTTC GTGCAGCATT CATCGTCACC GCGATCCTGT TGATCATATC GGGCATTGTT
GTCACCTTCG GCGTGCAGGA GCGCTTCACA CCGCCGTCGC AGGGAACGCG CAGAACCGGG
ATTATGAGTG ATTGGCGGCG CATTCTGGTG TTGCCAGGTG TTGCCGCCGC ATACACCACC
CGCTTCCTCA ACTGGCTCGG TCCGAACATG CTGCTGCCGG TGCTGCCGCT CTACATTGCC
ACGCTCATGC ACGGCAACGA AGGGGTCAGC ACCTTTACCG GCATTATCGT CGGACTCTCC
TCGGCGGCAG GAACTGTCAG CGCGCTCTAC CTGGGGCGGT TGGGCGACCG TATCGGTCAC
CGACGGGTGC TGCTGGCGGG AACGGCGGTT GCGGCGCTTG GTTTCATTCC GCAGGCATTC
GTAACAACTG GATGGCAACT GCTCATGCTT CAGGCGCTGA CCGGCGCAGC GACAGGGGGC
ATGAATCCGG CGCTCAGCGC ACTGCTGGCG CGCTACACCG GCAGCGGCGA CGAAGGGGCG
GTATTTGGCA TCGACAACTC GGTGAACTCC GCTGCGCGCG CCGCCGCGCC CCTGCTTGGC
GCTGCTCTCG CCGCCTGGTT CGGGTTGCCG TCGATTTTCC TTGTTACCGC ACTTGTCCTG
CTGGGCGCGG CGGCGCTGAC ATTCCGCTGC CTGCCAGAGC GTATCGCCGT AGCGTCGCCA
GCGACGCCAG CGGTGCAATC CTGA
|
|---|
| Protein sequence | MTRWQQTLFI LVAAQLVSAV GFGMFFPFLP LYVERLGTNT GFSLEFWAGM VFSGQALTMA
ISSPIWGSLA DRFGRKAMIE RAMYGGAVII LLMGFARSAE ELALLRAIQG AITGTIAAIN
ALTASLVPRE RVGYAMGMLQ VGLWAGIAAG PMLGGVVADL LGFRAAFIVT AILLIISGIV
VTFGVQERFT PPSQGTRRTG IMSDWRRILV LPGVAAAYTT RFLNWLGPNM LLPVLPLYIA
TLMHGNEGVS TFTGIIVGLS SAAGTVSALY LGRLGDRIGH RRVLLAGTAV AALGFIPQAF
VTTGWQLLML QALTGAATGG MNPALSALLA RYTGSGDEGA VFGIDNSVNS AARAAAPLLG
AALAAWFGLP SIFLVTALVL LGAAALTFRC LPERIAVASP ATPAVQS
|
|---|
| |