| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_1016 |
|---|
| Symbol | |
|---|
| ID | 5207962 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 1246786 |
|---|
| End bp | 1250583 |
|---|
| Gene Length | 3798 bp |
|---|
| Protein Length | 1265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640594630 |
|---|
| Product | thrombospondin type 3 repeat-containing protein |
|---|
| Protein accession | YP_001275375 |
|---|
| Protein GI | 148655170 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACGTG CTCTTGCTCG AATCGGCCTG ATCCTCGGGA TCGCGTTGAT CGTTCTCTCA
TCTGTACCTC CGTCACGATC CACCATGGCA GAGTCGGCCA GTCCTACCGC AGTTACCAAT
ACGCTGTATC TTTCAGGATC GGGTTACCTT CAAGTGCCCA ACGCACCGGC CCTCAACCCC
AGCGGCGGCC TCACCGTCGA GGCGTGGGTG CGCCGGATTG ACACCTCAAC GTCCTGCCAG
ACTATCGTCG GCAAGGGCTA TCAGACCGGC TTCTGGCTCG GCATCTGCGG GAACAAACTG
CGCTTCTACA GCAACGGATC GCTCTCTTGG TTCGACGGCG CAACGGCCTT TGTCTCGGGC
GAATGGACGC ACGTGGCGGC GACCTTCGAC GGCACGACCC GCCGCCTCTA CGTCAACGGC
AACCTCGACG CCGAAAGCGT CCGCGTCAGC CCGTTGCCCG TGAACGCGCA ACCGCTGCGC
ATCGGCGCAG ATGTGGGCGA TATCTTCAGC ACCTACCCCT TTGTCGGCCA TCTGGCCGAC
GTGCGCTTGT GGGGTGTGGC CCGGGGGCGC GACGAGATCC GCCGCGACAT GGTGCGCCTG
TTCGAGGCGC CGGAAACAGG TTTGATCGCA GCCTGGCATC TGGAAGGCAC TTCGGCCGAC
ATCTTCGGCA ACCACAATGC CACTGGTGTT GGCACGTATG CTTTCAACGA CCCGGCTGCG
CCGTCAACGA CGCACCATCC GATCAAAGTG CCACGACTGT TCGTTGCGCC GATGGTCGAT
GGCTGGTGCG GTTCAGGCGA GTACGGTAGC GGCGCGCTGC GGCTGCGCCT GCCGATGTGG
CTGGATGGGG TGAGCTACCC GCCCAGCCCG GTGTGGGTGA ACATCGGAGC CACGTCAAGC
AACGTGTATG TGTGCATGGA GCGGGTGGAG GTTGGCACAT CTGCCATGGT GGTCTATCTC
GACCCCAACA ACGGTGGCGA TGCATGGGCG CAGGCGGATG ACCGGGCTTT CATCGTCAGG
GCTGATAGGA CTAGCCAATG CAGGCAGGGA GATGGTTCGG GCGGCTACGT CAACGCATCG
TCCTGCGATT ATCAGGCAGT GCTTCCCTCC TCTTTCGAGT TTGAGAAAAG CGCCGAGTTT
CGCTTCCCGC GTTCACTCCT GACCGGTTCG CCTGCCCTCT TCCGCCTGGC ATTCGCACAT
CAGGGCGTCG GCGGCACGGC GGGCAGCGAC CGCGTCTGGC CGCTGGGTGC GGCACAGAAC
TCGCCGGCCA CCTGGCTCAC TTTCGTCATC AACGACATCG ACCTGCCCCG CAGTGACAGC
GGCAACCCGA CCGTGTCGGT TCGTCACTCG CCCGACGTGG TGCGGCGCGG CACAACAGTC
TCCTTCACCG CTACGGCGAG TGATGACGTG GACATCCAGA GCATTGATAT CATTGTGGGC
GGCATAGCAC GACGCACGTG CGACTTCGCC GGCACGAACG ACCGCAATGG TGCGTGTACC
TTCTCCATGA CGTTTAGGGA GCTGGGCCGA CAATACTACT CCGCCCGCGT GGTCGATCAT
CGTGGCCGGA TCGGCTTCGC GCCGATGTCG AGTTTTCTAG TGCAGGTGGA TGGCCGCGCA
CCGGTCATTA CCATTGATCA TTCCCCGCGC CGACCGGCCA TTGGGGCTTC CGTCACCATC
AATGCCACGG CTACTGACCC CAGCGGTGTG CGCTCCATCA CCATCAATTC ACCATCGGTC
CGCAGATGCA CCTTCGACGG CACACGCACG ACCGAAACGT GCACGGTCAC CGTTGCACCC
GGTGGGCGGC GGATTGTCGG CTACTCGGCC AGCGCGATTG ATAGCGAAGG ACTATCTGCC
TACACATCCG GCGTGAGCAT CCTGTTCGGC AACACACCCA CCGCGACACG ACCCGACACT
GACCAGGACG GCATTGTAGA CGATCTCGAA CGGCTGCTCG GCACGCGCCC CGATAACCCC
GACACCGACC GCGACGCGCT GCCCGATGGC TGGGAGGTGA TCGGGTTGGA CTTCGGCTCC
GAGTTCGTCA ATTTACCGGC GCTGGGCGCC AACCCATTGC GCAAAGACAT ATTCGTGCAA
TACGACTACG AGCGCGGGGC GAAGGTCGAG CCAGAAACAT GGCCCTACGT CATCGAGCTG
TTCCGCCGCC ACGGCATCAC CCTCCACCTG ACCGAGAATG AGCGGCCACG GAGCTTCGTG
CCTGGCCGGG GGGCCATCGG TGCCGAGCAG GCCGCTGCGA CGATTGACCC TGCCACTGGC
CAATACTACT TCCCGCCCAA GCTGAGCTGG ACGCATCACT ACATCTACAG CCGCTACTTC
CCCGGCCGCA GCGGCGCGTG GCACCACGTG ACGATTGATA TGCGTCAATG TCCGGAGGAT
GTGTTCGATC CTGACGCTCC CGGCTGCTTT GACCGGCCTA TCTGGGATCA GATCTATCGA
ATCGTTCACG AGCTAGGGCA CAACCTCGGT CTTGGTCACG GCGGACGGAC GGGATCGGGT
AGGCAGACGC GCATAGGTGA CATCGTGTAT TACGAGGGTG CCTGGAATAA CACCAACATG
AAGCCGAATT ACATCAGCGT GATGAACTAT CGCTACAACG CCAGCCATCT GTGCTACAGG
GAGGACACGA ACCAATGGTT CGCGGCGACG GACTTCCAAA GCGGCTCGCG GTTCGATCTG
AACGAAGCCA GGCTGCAAGA GAACCGCATC TACGAGCTAC CGCGCAACGT GCAGTGCGCC
ACGGCCGACT CCGCCTTCGT GCCCGTCTTT GAGTATAGCT GCACCGATCC GATGGGTCAA
AGGTGGATCG TGCTGAGCGA TGGAAGGCGC ACCCTGGGTC GGCAGCGGGG CGGTCAGACT
CGTGCGGACA CGCCGGACAG CGACTGGCAA TTCACCGACC TGCCAAGTCA TGCTCCAGGC
GTGGATTGGA ACTGTGACGG CACTATCCAA ACCGCGACGG TGAGCCATAA CATCAACGGT
GACGGCATCG AGGGTATGTG GGGTACAGGA CCCGCGAACG AAATCCTGAC CAGCCCCGAC
GACTGGCGCG GCCTGCCCTA CGGTCCCGGC AGCGGGTGCT GGATCGTGCG CGATAGCAGC
GAAGCAATCC GGCGCGTGAT GCCCGATGCT TACCGCAATG CGATCGGTCG AAGCGACTGC
CGTATCGCGC CAGCGGCCGG AATGAGCGCA CTCAATGCTG AGGCGTCGCT TTTGCCGGAA
CAACCATCGG CAGCCGGTGC GCCGCTCAAC GTTTATCCAC CTGAACCGAT CGAAGAAAAC
GATATATCGT TGCCGCCAAT ACCGAACCTG GAGCAATGCA ACGGCGTGAA CGACGACGGC
GACGATCAGA TCGACGAGGG CTGCCTGGAC ACCGACCGCG ACGGCATCGC CGACGCGATC
GACTCGTGCC CGCAGACGCC GAACCCCGAC CAGGCCGACG CCAACGCGAA TTACCTTGGC
GACGCCTGCG AGCGGCCGAC GCTGGCATCG CTGACGCTGA CGCCTGCGCC AGGTAACAAT
GCGCTGGCGT GGAGCGGCAC GGCGACCGAC GTGCTGGGCT ACAACGTCTA TCGCCAGTGT
GAAGGGGAAG ATACACCAGC GCTGCTGGGT GGAGATTTTC CCACCACGAC GGCGCAGAGC
TATACCGACG CGACCGCTGG TGCGGCGAAG TGTCAATACA TTGTGCGCGT CCTCAATCGC
AATGGCGTTG AGACCGATGA GCGCATTGTA GGTAGTCTGC CGATGAAGGT ATTCATACCA
CTGCTGCTGA AGCAGTGA
|
|---|
| Protein sequence | MRRALARIGL ILGIALIVLS SVPPSRSTMA ESASPTAVTN TLYLSGSGYL QVPNAPALNP
SGGLTVEAWV RRIDTSTSCQ TIVGKGYQTG FWLGICGNKL RFYSNGSLSW FDGATAFVSG
EWTHVAATFD GTTRRLYVNG NLDAESVRVS PLPVNAQPLR IGADVGDIFS TYPFVGHLAD
VRLWGVARGR DEIRRDMVRL FEAPETGLIA AWHLEGTSAD IFGNHNATGV GTYAFNDPAA
PSTTHHPIKV PRLFVAPMVD GWCGSGEYGS GALRLRLPMW LDGVSYPPSP VWVNIGATSS
NVYVCMERVE VGTSAMVVYL DPNNGGDAWA QADDRAFIVR ADRTSQCRQG DGSGGYVNAS
SCDYQAVLPS SFEFEKSAEF RFPRSLLTGS PALFRLAFAH QGVGGTAGSD RVWPLGAAQN
SPATWLTFVI NDIDLPRSDS GNPTVSVRHS PDVVRRGTTV SFTATASDDV DIQSIDIIVG
GIARRTCDFA GTNDRNGACT FSMTFRELGR QYYSARVVDH RGRIGFAPMS SFLVQVDGRA
PVITIDHSPR RPAIGASVTI NATATDPSGV RSITINSPSV RRCTFDGTRT TETCTVTVAP
GGRRIVGYSA SAIDSEGLSA YTSGVSILFG NTPTATRPDT DQDGIVDDLE RLLGTRPDNP
DTDRDALPDG WEVIGLDFGS EFVNLPALGA NPLRKDIFVQ YDYERGAKVE PETWPYVIEL
FRRHGITLHL TENERPRSFV PGRGAIGAEQ AAATIDPATG QYYFPPKLSW THHYIYSRYF
PGRSGAWHHV TIDMRQCPED VFDPDAPGCF DRPIWDQIYR IVHELGHNLG LGHGGRTGSG
RQTRIGDIVY YEGAWNNTNM KPNYISVMNY RYNASHLCYR EDTNQWFAAT DFQSGSRFDL
NEARLQENRI YELPRNVQCA TADSAFVPVF EYSCTDPMGQ RWIVLSDGRR TLGRQRGGQT
RADTPDSDWQ FTDLPSHAPG VDWNCDGTIQ TATVSHNING DGIEGMWGTG PANEILTSPD
DWRGLPYGPG SGCWIVRDSS EAIRRVMPDA YRNAIGRSDC RIAPAAGMSA LNAEASLLPE
QPSAAGAPLN VYPPEPIEEN DISLPPIPNL EQCNGVNDDG DDQIDEGCLD TDRDGIADAI
DSCPQTPNPD QADANANYLG DACERPTLAS LTLTPAPGNN ALAWSGTATD VLGYNVYRQC
EGEDTPALLG GDFPTTTAQS YTDATAGAAK CQYIVRVLNR NGVETDERIV GSLPMKVFIP
LLLKQ
|
|---|
| |