Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_0604 |
Symbol | |
ID | 5207542 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 750940 |
End bp | 752226 |
Gene Length | 1287 bp |
Protein Length | 428 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640594223 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_001274976 |
Protein GI | 148654771 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00377] anti-anti-sigma factor |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0938215 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000133748 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCATCAG CGAATGATCC TGCCGACGAA CTGGAACATC TGCGCCATCG CGTTGCCGAA CTCGAAGCAT TGCTGGCGCA GCGTCGGCAG GAAGATGAAG TCACCGAACG ACTGAAGGCG ATCATTGAAT ATACACCGGA CGTGATCAGC ACTGCCGACA GCGAAGGGCG GGTGATCTTC ATCAATCCGG CCGGTCAGCG TCTCCTTGGC GGAGCGGATA ATCTGTCGGG TGAGAGTCCT ATTCCCCGGT TTCATCCCGC CTGGGCGGCC GATCTGATCC TCAACCAGGG ATTGCCGCAG GCTGCCCGCG ACGGGGTCTG GAGCGGCGAG ACGGCAGTGC TCGGCCCGCA GGGTCAGGAG ATTCCGGTCT CACAGGTTAT CATTGCGCAC AAAAATGCTG CCGGAGCAGT CACCCACTAC TCGACTATTA TGCGCGACAT GAGCGAGAGT CGCAGGGTCG AAGCAACGCT GCGCGACAGT GAGCAACGCC TGCTCCGTTT TCTCGATGCG CTGCCGGTCG GGGTCTTCGT CGTTGAGCCG GACGGTCGCC CCTTCTACGC CAACCGCAGC GCGATTGAGA TACTCGGCAA GGGTATCATG CCCGATGCCA CCACCGGTCA ACTCGCCGAG GTTTACCGCG CTTTTGTCGC CGGAACCGAT CAACTCTACC CCACAGAGCG CATGCCGCTG GTGCGCGCGT TACACGGGGA GACCTCATCG GTCGATGATA TGGAGATCGA GCGCCCAGAT GGTCGGATAC TGATTGAGAT CCACGGCGCA CCGATTCGCA ATGCGGAGGG GCACATTATG TACGGTATGG TGTCGTTCAC CGACATCACG CTGCGACGAC GCGCGGAGGA AGCCATTCGT GAACGTGCGC TGCAACAGGA AGTGATCGAA GCGCAACAGC TGGCGCTGCG CGAACTGAGC ACCCCGCTGA TGCCGATCGC CGAAGGGGTG GTGGTGATGC CGATCATCGG CACGATCGAT AGCCGCCGCG CGCAGCAGAT TATGGAAACA CTGCTCGAAG GCATTGCGAC CCATAGCGCC GATATTGCCA TCCTCGATAT TACGGGCGTC AGAGTGGTCG ATACGCAGGT CGCCGGCGCG CTGATCCGGG CAGCGCAGGC GGCGCGGATG CTGGGCGCAC GGGTTGTGCT CAGCGGTATC AGCGCCGAGG TCGCGCAGAC ACTGGTGCAC ATCGGCGCCG AAATGCAGGA CATGATCGCG CTGCGCAGTC TGCAACAGGG CATTGCGTAT GCGCTGGCGC AGCGGCAGCA GTTGTAG
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Protein sequence | MSSANDPADE LEHLRHRVAE LEALLAQRRQ EDEVTERLKA IIEYTPDVIS TADSEGRVIF INPAGQRLLG GADNLSGESP IPRFHPAWAA DLILNQGLPQ AARDGVWSGE TAVLGPQGQE IPVSQVIIAH KNAAGAVTHY STIMRDMSES RRVEATLRDS EQRLLRFLDA LPVGVFVVEP DGRPFYANRS AIEILGKGIM PDATTGQLAE VYRAFVAGTD QLYPTERMPL VRALHGETSS VDDMEIERPD GRILIEIHGA PIRNAEGHIM YGMVSFTDIT LRRRAEEAIR ERALQQEVIE AQQLALRELS TPLMPIAEGV VVMPIIGTID SRRAQQIMET LLEGIATHSA DIAILDITGV RVVDTQVAGA LIRAAQAARM LGARVVLSGI SAEVAQTLVH IGAEMQDMIA LRSLQQGIAY ALAQRQQL
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