| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_0285 |
|---|
| Symbol | |
|---|
| ID | 5207220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 363480 |
|---|
| End bp | 364631 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640593911 |
|---|
| Product | glycoside hydrolase family 42 protein |
|---|
| Protein accession | YP_001274667 |
|---|
| Protein GI | 148654462 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3934] Endo-beta-mannanase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.696362 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00613688 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATGCGTT TTCGTCGTCG CAGTTCGAGA TACTCTGGAT ATGCGCCGCG TCTCAGCCGA
TGTCTGCCGG TTCTGCTCAT CATCACTGCG ATATGCGTCG GAGCGTGTGG ACAGGCGCGT
GAGCCGTCTG GCGGTGCGCT GCCGCCGGTC ACGTCCGATG GTGAACGTCT GCGCGCCAGC
GGGCGCGACT TCGAGGTGCG CGGCGTCAAC TACATCCGTC CGACCGGCGA CGATGAGCGT
CGCTGCTGGA CGCTCCAGTT TGGCGCGGAC ATCAACTGCC CGTGGCGCAT ATCGGTCATC
GAAGCCGACT TCGACGCCAT GCGCGCGCGG GGAGTCAATA CGGTACGCAT CTTCCTCAAC
TACTACGTTT TTGGCGGGCA ACGCGAAGCC GATGCTTCCT ATCAGAAGAG CGACGCGCTC
CGGCACCTGG ACGAGTTTAT CGCAGCAGCG AACCGGCGCG GTCTGTATGT TCTGCCTGTG
CTTCTCGTCG AATACCCGCA GGACCGCTTC GGACCAGAGC ACTATGAGCG GGCGCTGGAG
TGGCATGTTC GACCGCTGGT GCGTCACTTC GCTGGCAAAC CCGGCATTCT GGCGTGGGAT
CTGTTCAACG AACCGGATAT TGGCAGCCCG ATCGATGAGC GATGCTGGGA CTGGGACAAC
GCCGATTTCC CGCTCTGCTT TCCGCTCGCC GAGGAGCGCC AGCGATTCGT GCGCGTCATT
CACGATGAAG TGAAGCGTCT CGATCCGGAG CGCCTGACGA CGGTGGGCAT GGCGTTTGCG
AAAAGTTACT TCGAGCCGGC TGAAGCGACA ATTCGCATGG CGGACGTGGT TGATTTCTAC
ACGTTCCACT ACTACGACAA CGAACCCTAC AACAGCGGAC GCTACCGGCA GCACTGGTAC
TATGGCGAAG GGTTTCCCGC CGACCTGCGG CGTGCCATCG AGGAACTCCA TGCGCTTGGG
CTGCGGAAAC CGGTCGTCGT CACCGAACTG GGTTTCCCGA CCGGTCCGGG TACAACCCGC
ACCCTCGACG ATCTCCGGCG CGACCAGCAG ATCGCGCTGC GAACCATCCG CGACGCACGC
GGCGCTGGCG TTGTGCTCTG GTCATTTCAA TCGTCGCCAG AGGAGTTGCT CGGAGACCTG
TTTGTGAGGT GA
|
|---|
| Protein sequence | MMRFRRRSSR YSGYAPRLSR CLPVLLIITA ICVGACGQAR EPSGGALPPV TSDGERLRAS
GRDFEVRGVN YIRPTGDDER RCWTLQFGAD INCPWRISVI EADFDAMRAR GVNTVRIFLN
YYVFGGQREA DASYQKSDAL RHLDEFIAAA NRRGLYVLPV LLVEYPQDRF GPEHYERALE
WHVRPLVRHF AGKPGILAWD LFNEPDIGSP IDERCWDWDN ADFPLCFPLA EERQRFVRVI
HDEVKRLDPE RLTTVGMAFA KSYFEPAEAT IRMADVVDFY TFHYYDNEPY NSGRYRQHWY
YGEGFPADLR RAIEELHALG LRKPVVVTEL GFPTGPGTTR TLDDLRRDQQ IALRTIRDAR
GAGVVLWSFQ SSPEELLGDL FVR
|
|---|
| |