| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_6300 |
|---|
| Symbol | |
|---|
| ID | 4036738 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007972 |
|---|
| Strand | - |
|---|
| Start bp | 155723 |
|---|
| End bp | 156634 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637975326 |
|---|
| Product | conjugal transfer protein TrbG/VirB9/CagX |
|---|
| Protein accession | YP_582109 |
|---|
| Protein GI | 94152707 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
|---|
| TIGRFAM ID | [TIGR02775] P-type conjugative transfer protein TrbG |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGCTC GCACCCCCTC CCGGTTCATC CCTCTGGCCA TTGCGCTGTG CATGGCCATG
CTGCTTTCCG CTCCGGACAG TCATGCGGCC GACAAAAATG CGCGTCGCAC CGGCGCCGGC
ATGGCCGGAC TGGGAATCGG CGACCTCAGC GACGCTATGA ATCCGGCCAA TCCGTTCAAT
GGCGGCGTTG ATCCGATCGC ATTGCCGGGT GACTCTCGGC TTGTGGTCTT CACCTACAGC
CGAGATCAGA TCTTCCGCGT GCTCAGCGCA CCGCTGAAGA TCACAACCAT CGAATTTCCA
GACGACGAAC AGATCGTTGG CGATCCCGCC TGGGGCGAAA ACGTGCGATG GGACTACGAC
ACGGACGGTG CCAATCATCT TTACGTGAAG CCGCAGGCGG CGGGGCTGGT CAACACGCTG
TCGGTCAATA CGAACAAGCG GAGCTATGAG TTCACGCTCG TATCGTCTCC GCTCGGCGGC
ATTTTTTACC AAAAGGTCCG GTTCAAGGTT CCGACGTCGA TCTCCGCCAA GGTGAAGGCG
CGCAACGACG CGCGTGGTGA AGCGCCGGAC GAAGCCAAGG GTGCAGAAGC CGAAGGATCG
CGCAATCCGG ATGCGGTTGG CGTTTCTCCC GATCAACTGA ATTTCGAGTA TGCGATTTCG
GGGAGCGCCA GTTTCAAGCC GGAAACTGCC TTTGACGATG GCAAGGCGCT CTGGTTGCGC
CTGCCCAACG CAGCGCTGCA GAACTGGCCG GTCGCTTTCA TCAAGGACGG CAGCGATTTC
GTGGTGGTCA ATGCCATCCG CCGTGGCGGG TACCTCGTGG TGCAGCGACT GGCTGATACC
GTCGTGCTGC GCTCGGGCGA CGATGAAGTG AAGATCGAGC GCGGCCGCCG CCGCATCCTG
GGGCTGTTCT GA
|
|---|
| Protein sequence | MEARTPSRFI PLAIALCMAM LLSAPDSHAA DKNARRTGAG MAGLGIGDLS DAMNPANPFN
GGVDPIALPG DSRLVVFTYS RDQIFRVLSA PLKITTIEFP DDEQIVGDPA WGENVRWDYD
TDGANHLYVK PQAAGLVNTL SVNTNKRSYE FTLVSSPLGG IFYQKVRFKV PTSISAKVKA
RNDARGEAPD EAKGAEAEGS RNPDAVGVSP DQLNFEYAIS GSASFKPETA FDDGKALWLR
LPNAALQNWP VAFIKDGSDF VVVNAIRRGG YLVVQRLADT VVLRSGDDEV KIERGRRRIL
GLF
|
|---|
| |