| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_6220 |
|---|
| Symbol | |
|---|
| ID | 4036658 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007972 |
|---|
| Strand | - |
|---|
| Start bp | 71484 |
|---|
| End bp | 72932 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637975246 |
|---|
| Product | DNA repair exonuclease-like protein |
|---|
| Protein accession | YP_582029 |
|---|
| Protein GI | 94152627 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0420] DNA repair exonuclease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.592286 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGAAG ATGGCGAAAG CCTGTTGGCT GCGCATTTCT CTGATTTGCA CTACTCCCCT
GGTCATTTGG CCGAGGCAGA TCGTTGCTTT GGCTTTGCGG TGGAGGACGC GATCGCAAAT
CGTTGCCGGG TTGCCGTGGT GTCGGGCGAC TCGACCGACC ACCGGTTGGA TGCCCACACG
CCGGCGCTCT CCGCGCTGGC GCGACGCATT CACCAGCTAT CCGTGCACAT GCCTGTGGTG
ATGCTTCAAG GCACCTTCAG CCACGAGCCC CCAGGCACGC TGGATCTGTT CCGACTGATC
GGCGCAAGCT TCCCGGTATA CGTTGCAGAC CGGATTCACC AGGTCGCGCT CGTTGGCCGG
ACATTCATTC CGAGCGATGG CGCGATCTTC AGCCATGCGG AAATGGACAA GCTGCTGACC
CAGCAAGGGC TACCAGACGT CGTCTTCACC TGCGTACCCA CGGTCAACAA GGCGGTGCTG
GCGGCCGCGG CCGGCGTGGC AAACGCCGCG ACGGCGGTTG GCGACCACCT GGCTGACTAT
CTGGCTGCCG CGGGCACTGT GAATCGTCAA TGGCGCTCAC ACGGCGTCCG TACGATCGGC
GTTTCCCACG GCACCGTCAA CGGTTGCCAG ACGGAGCACG GCGTGCCGAT GGCCGGACTC
GACCACGAGT TCACTATCGG GGCACTGTTC GAGGCTCACT GCGACGCGTT CATGCTCGGC
CACATTCACC GTGCCCAGCA GTGGGAACGT GAGGGCAGGG TGGTGGCCTA TCCCGGGTCT
ATCGGACGGT TCCACTACGG CGAAATCGGC GCGAAAGGCT ATCTTCAGTG GCAGGTATCT
CCGGGGGAGG CAGTGGCTAT CCCGGTGAAG ACACCCGCGA GCGAGACCGT CTGCATCGAC
TTCGACGGGC CGCCTGACAT GGCAAAACTT GCCGAGATGG CCGCGGACGC AGCGCACAAG
TTCGTGCGGG TGCGGTGGAC GGTCAATGAG GAGCATCGCC AACTGGTCGA TCGCGAAGCC
ATCGAGGCGC TTTTTGTCGG CAGTGCCGAG GTCAAGCTGG AAGCACGTGT CCTGCCGGCT
GTTCGCAGCC GCGCTGAAGG CATCAGCCGG GCGGCCACTT TGTCCGCAAA GCTGGGACGT
TGGTGCGAAC TGACCGGTGT CGATGCAAAT CCGTTGCTGG ACAGTCTGTC GATGCTCCAA
AACCTCGAGG CCCAGGCGAT AGCCGATCAG GTGCTGGCTG GCCTTGATGA AATGTCCATG
CCCGTTACGC AGAAGGTCGG CGCCGTAGAA GCTGTTGCGC CACCGTTCGT TGCGAAGCTG
ACGGACATGG AGCTCGAGGA ACCGAGCGCC GCACCCGAGG CATTCCCGGT CGCGGCGGCG
GAGCCAGTAG CGCCCATTGC CACTGCGTCA GCACCGATGA ACTGGCTGAC CGACGATCTT
TTTGCGTAG
|
|---|
| Protein sequence | MLEDGESLLA AHFSDLHYSP GHLAEADRCF GFAVEDAIAN RCRVAVVSGD STDHRLDAHT
PALSALARRI HQLSVHMPVV MLQGTFSHEP PGTLDLFRLI GASFPVYVAD RIHQVALVGR
TFIPSDGAIF SHAEMDKLLT QQGLPDVVFT CVPTVNKAVL AAAAGVANAA TAVGDHLADY
LAAAGTVNRQ WRSHGVRTIG VSHGTVNGCQ TEHGVPMAGL DHEFTIGALF EAHCDAFMLG
HIHRAQQWER EGRVVAYPGS IGRFHYGEIG AKGYLQWQVS PGEAVAIPVK TPASETVCID
FDGPPDMAKL AEMAADAAHK FVRVRWTVNE EHRQLVDREA IEALFVGSAE VKLEARVLPA
VRSRAEGISR AATLSAKLGR WCELTGVDAN PLLDSLSMLQ NLEAQAIADQ VLAGLDEMSM
PVTQKVGAVE AVAPPFVAKL TDMELEEPSA APEAFPVAAA EPVAPIATAS APMNWLTDDL
FA
|
|---|
| |