| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_6086 |
|---|
| Symbol | int |
|---|
| ID | 4036484 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007971 |
|---|
| Strand | + |
|---|
| Start bp | 215118 |
|---|
| End bp | 217268 |
|---|
| Gene Length | 2151 bp |
|---|
| Protein Length | 716 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | |
|---|
| Product | tyrosine-based site-specific recombinase |
|---|
| Protein accession | YP_581895 |
|---|
| Protein GI | 94152488 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.0503413 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCCC CGGCATCGGG GGCCACCATC GTGACGCCAT TGCGCAGACG CCGGTCCGTC
ACGCGCCGGC AGCTGCATCG GGGGCATTTC GGGTTCCTGC GGGCCATCAT CCAGGGCCTG
CATGCACGGG CCATGTGGGA ACGCTATCTG ATGGAGGAAG GCGAGATCGA GGCCGACCAG
GAATTGCTGG CCCGATCCCC GGAGGGCGAG GAGGGCGCGG AGGCCGACAT CGAAGCCGAT
CCGGCCGCGC ACGCTTTTGC CACCCATCCC AAGGTCCGTC GGGTGACAGC CTGGCTGCGC
AGCGAGCTCG TCGCCGCGGC AACTCGGGCC CAGCGCCCCG GTACCGCCCG CCGCCTGAAG
CTGGAAGCCA GGGACCTCCG GAAGATCGGG CAGAAAGGGT TGGGGCTGCC GTCGCTCGAG
GAGTTTGTGG CGGAGACCGG CATGGACGGC TTTGGCGAGT CCGAGCAACT GGCCGCCTAC
CAGGAACGCT ATGGCGACGC CCTGAAACGG GAGTCCAAGC GCGCCCGGAT GATGCGCCGC
CAGCTGGAGG CGATCGACTG GCTCGAAGAA CGGTACGCCC AGCCTGTCCT CGCCGGCGAC
GCGTGCCGTG CCTGGCTGGC CGAACCCCTC GCGGAGCGGC TGGAGGTGGC CGGTGTGACG
ACGCTGGCGG ATCTGCTCGA TCGCATTGAC GGGCTGGGTG CCGGCTGGGC CCGCGGCCTG
CCGGCGATTG GCGCCGGCAA GGCGAGGGCG ATCGAAGCCT TCCTGACCAC TCACGCCGAG
ACGCTGGGCC GGTCGATCGG CAACCACGTG GCCGTACCGC GCCGCAGGCG CTATGTGCAC
GAGATGGCTT CGGTCGTGCC CCGCGGCAAG GAAAACGCCC TGGTCCCGCT CGACAAGCTG
GTGCTGCCTG TCCATCTGGA CGGTCGCGAC GGCGCCTACC GCCTGCCGCA GGCTCGCTGC
CTCATCAACG CCCACAATGA CTACGAAGCG GTGCTGTCCT GGCTGCGCTC CAAACCCGGG
CTGGCGCCGG ATCGGATCTT GCGCCTGCGG GAGAAGCGCA AGGATGTCGG CACGGGGCAG
GGGCCCTACG ACTGGCTGAA TTACCTGTCG AATACCCAGC GGGCGTACCG GAAGGAGGCG
GAACGCTTCC TCCTGTGGTC GATGCTGGCC CGGGGAAAGC CGCTGTCCTC CATGGACACG
GACGACTGCA TGGCGTACCG GGACTTCCTC GCCGACCCAC CGAAGGAATG GTGCGGCCCG
CGCTCGCGGG AGCGATGGAC GCCCCTCTGG CGACCATTCG AGGGCCCGCT GAATCCTCGC
GCCCAAGGCT ATGCGATCGG GGTGCTGGCC AACCTGTATG CGTATCTCAA CGCCAAGAAC
TACCTGGCCG GCAATCCCTG GCAGGGCATT CACGTGCCGA CGAGCGCCAA ACCCGAGCTG
GACGTCGGCC GCAGCCTGAC AGAGGACCAG TGGGCCTTTG TCAAAGGGTG TCTGGCCCGC
CTGCCGGCGA CGTCCATCCA TCGCCGGCTG CAGGTCGCTT TGCCGCTGCT GTACGCGACC
GGCCTGCGGC TGTCCGAGGT GATCGCGGCC AGCACGGACG ATCTGGAGTG GGTGAGCCTG
GCCCAGCCCG GTACCGGCGA GCGTGAGGAG GGCTGGTGGC TCACCGTGAT CGGCAAGGGG
AACAAGCTGC GCCGCGTGCC GGTACCCGAC ACGACGGTCC ACGCATTGGG CGAGTATCTG
GAGTCGCGGG GGTTCGCCAG TGATCCTGCC CGGTGCCGCG GTGTGGCGCT GCTCGGCCAC
GCGACCGACC AGGAGGAACG GGCAGGGGGG TGGGCGAAGA TTGACACGGC CCCCGCCGAG
GCGGGATTGG CGGCGACCAC GTTGTACCGG CAGATCAAGC GGTTCTTCCA GGCGTGCGCG
TCCGAGCTGG AAGCGGTCGA CGCCCGAGGC GCCTCGCGCT TGGCGGCGGC CAGCACGCAC
TGGATGCGGC ACACCCATAT TTCCCATGCA TTGGCCGCTG GCGCACCGCT CGAGGCCGTC
AAGCAAAACG CGGGGCACGC ATCGCTTGAT ACCACCACCC GCTACGTCAC GACCGAGGAC
GCCCGCCGCC GAGCTGCAAT GAGGAAGTTC TGGGATTCGC AATCAACGTA A
|
|---|
| Protein sequence | MNAPASGATI VTPLRRRRSV TRRQLHRGHF GFLRAIIQGL HARAMWERYL MEEGEIEADQ
ELLARSPEGE EGAEADIEAD PAAHAFATHP KVRRVTAWLR SELVAAATRA QRPGTARRLK
LEARDLRKIG QKGLGLPSLE EFVAETGMDG FGESEQLAAY QERYGDALKR ESKRARMMRR
QLEAIDWLEE RYAQPVLAGD ACRAWLAEPL AERLEVAGVT TLADLLDRID GLGAGWARGL
PAIGAGKARA IEAFLTTHAE TLGRSIGNHV AVPRRRRYVH EMASVVPRGK ENALVPLDKL
VLPVHLDGRD GAYRLPQARC LINAHNDYEA VLSWLRSKPG LAPDRILRLR EKRKDVGTGQ
GPYDWLNYLS NTQRAYRKEA ERFLLWSMLA RGKPLSSMDT DDCMAYRDFL ADPPKEWCGP
RSRERWTPLW RPFEGPLNPR AQGYAIGVLA NLYAYLNAKN YLAGNPWQGI HVPTSAKPEL
DVGRSLTEDQ WAFVKGCLAR LPATSIHRRL QVALPLLYAT GLRLSEVIAA STDDLEWVSL
AQPGTGEREE GWWLTVIGKG NKLRRVPVPD TTVHALGEYL ESRGFASDPA RCRGVALLGH
ATDQEERAGG WAKIDTAPAE AGLAATTLYR QIKRFFQACA SELEAVDARG ASRLAAASTH
WMRHTHISHA LAAGAPLEAV KQNAGHASLD TTTRYVTTED ARRRAAMRKF WDSQST
|
|---|
| |