| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5940 |
|---|
| Symbol | |
|---|
| ID | 4042804 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 145455 |
|---|
| End bp | 146117 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637981359 |
|---|
| Product | LuxR family response regulator |
|---|
| Protein accession | YP_588068 |
|---|
| Protein GI | 94314859 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000000781929 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGGGC TACCACCAAG GCAGCAAGGC ATGGCAAGCA TTCTTATCGT CGACGACCAC
CCAGCGCTAC GGCTGGCGCT GCGTACCCAG CTTTCACAAC TGCTGGGCGT GACAACCCTT
CTGGAGGCCG ATAACGGGCA AGGCGCGCTC AACCTGGTCC GGCAGCACAG GCCAGACCTT
GTCCTGCTGG ATCTCGACAT CCCCCGCATG AGCGGCCTGG ATGCCGTGCC ACGCATACGT
GCCCTCCACC CCGCCGTCCG CATCCTGGTA CTTTCCGCGC AAGACCCCAT CCCGTTCGCA
GCACGTGCCT ACCACGCCGG CGCACAAGGC TTCGTGAGCA AGACGCAAAA CATGGACGCC
ATCCTCCGAT GCGTCGAAAG CGTGCTTGGG GGCTTCACCG TATTCCCGAA CAACAACCCT
CGCGACAACC CGCGCGAAAG CCGCGTCGTG GGCGACAGCG AAGGACTGAG CAAGCTGACG
GACAAGGAAG TGGAAATCCT GCGGATGCTG ACCCGGGGCA TGAGCAACAA GGCCATCGGC
AAGGCGCTGT TCATCAGCAA CAAGACGGTA AGCAGCTACA AGACCCGCGT GATGAAAAAG
CTGGCTGCGG ATTCACTGGT GGACCTGATC GACTTTGCCC GCCGCTGCCG GCTGATTCCA
TGA
|
|---|
| Protein sequence | MVGLPPRQQG MASILIVDDH PALRLALRTQ LSQLLGVTTL LEADNGQGAL NLVRQHRPDL
VLLDLDIPRM SGLDAVPRIR ALHPAVRILV LSAQDPIPFA ARAYHAGAQG FVSKTQNMDA
ILRCVESVLG GFTVFPNNNP RDNPRESRVV GDSEGLSKLT DKEVEILRML TRGMSNKAIG
KALFISNKTV SSYKTRVMKK LAADSLVDLI DFARRCRLIP
|
|---|
| |