| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5778 |
|---|
| Symbol | |
|---|
| ID | 4042642 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 2537702 |
|---|
| End bp | 2538778 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637981197 |
|---|
| Product | porin |
|---|
| Protein accession | YP_587906 |
|---|
| Protein GI | 94314697 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.431185 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAGT CAGCCAGCCT CTGGCTGCTT GCCGCCACCG TCGTGCCCGG CACCACTTAC
GCCGAATCCG GTGTGAACCT GTACGGCATC GTCAGTTCGG CGGTGCGCTA TACCTCGAAC
CTCGATGGCC GGCATCATGA CCAGGTCGCG CTCGTATCGG GCGGCATGGT AGGCAGCCGC
TTCGGCCTGC GGGGCTCCGA GGACCTTGGG GGCGGCAACA GGGCCATCTT CCAGCTCGAG
GCCGGCATCG GCAGCGACGA TGGCCGCGCG GCCTACAACG CATTTTTCGG CCGCCAGGCC
TGGGCCGGTC TCTCCGGCAA CTGGGGCAGT CTGACCTTCG GGCGCCAGTA CAACGCGCTC
AACAACATCG GCTGGGCGTT CAATCCGCTC GATCAGGGCT GGGGCAACTT CTGGTCCGAC
CCGCTGTACG TCGGCGGCGA CATCTTCTTC CAGGACTACC GCATCAACAA CAGCGTGGTC
TATCAAAACA CGGTCGGCCC GTTCTCCGTC CAGCTCGACT ACGGCGCGGG CGAGCAACCC
GGCAACCAGA GCCGCGGCAC CACGCTCGGC GGCGGCGTGA AATACCAGCA GGGACCGCTG
GCGCTGGGCG TAGCCTACGA CCAGCGCAGC AGCACCGATG GCACGAACAC GATCCGCAAT
TACTCGGTGG GCGGGTCCTA CGCGTTCGGC AAGGCCACGG CCTACCTGGG CCACATGGGA
CGTCGCGAAA CAGCCAGCGA TGCCTCATTC GCCACCTCGT TCATCGGCCT CGGCTATCAG
CTCACCCCTG CGCTGCATCT GTCTGGCGCC TATTACCGCT ACCAGCAACG CGGGGCCGTG
ACCACGCAGT TCCAGGAGAC ACCCATCCTG CTGGGCAGCG GCAACGCCGA CAGCGTCGCC
CTGGTCGGCG ACTACGCGCT CTCCAAGCGC ACCAGCCTGT ACGTAGAGGC CGATGTCGTC
TACGCGCGCG GCGGCACCGT CGGCCGCGAG ACCGAGTATT GGGCTGGCAC GCCGGTGACC
GACATCGACA GCACCACACG CGTGGGCGTC ATGGTCGGCA TGCGCCATCA GTTCTGA
|
|---|
| Protein sequence | MKKSASLWLL AATVVPGTTY AESGVNLYGI VSSAVRYTSN LDGRHHDQVA LVSGGMVGSR
FGLRGSEDLG GGNRAIFQLE AGIGSDDGRA AYNAFFGRQA WAGLSGNWGS LTFGRQYNAL
NNIGWAFNPL DQGWGNFWSD PLYVGGDIFF QDYRINNSVV YQNTVGPFSV QLDYGAGEQP
GNQSRGTTLG GGVKYQQGPL ALGVAYDQRS STDGTNTIRN YSVGGSYAFG KATAYLGHMG
RRETASDASF ATSFIGLGYQ LTPALHLSGA YYRYQQRGAV TTQFQETPIL LGSGNADSVA
LVGDYALSKR TSLYVEADVV YARGGTVGRE TEYWAGTPVT DIDSTTRVGV MVGMRHQF
|
|---|
| |