Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_5721 |
Symbol | |
ID | 4042585 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007974 |
Strand | - |
Start bp | 2478612 |
End bp | 2479670 |
Gene Length | 1059 bp |
Protein Length | 352 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637981140 |
Product | outer membrane porin |
Protein accession | YP_587849 |
Protein GI | 94314640 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 41 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAATCA AGATGCTCAC CGCTGCGGTC GTTGCCTTGG CGTCGACAGG TGCCTTTGCA CAATCGAGCG TGACAATGTA CGGCGTGGCG GACGTCGGTA TCGAATATCT GACCCATGCT GGTGGCGACA ACAGCACGGT TCGCATGTCG TCAGGCAATC TCTCAGGATC GCGTTGGGGC CTGCGTGGCA CCGAAGATCT GGGTGGCGGC CTGAAAGGCA TCTTCACGCT GGAAAGTGGC ATCAACATCG ACACCGGCAG CGGTGCCGAC TCGAGCCGCA TGTTCAATCG TCAGGCCTTC GTCGGCTTGC AGAAGGATGG CATCGGCACC CTGACGCTGG GTCGCCAACA GACGCTGCTG TATGACTTCG GTTTGAACTA TGATCCGATG GCCATTGCGA CGCGTTACTC GATCATCGGA CAGGACGGTG CGTTTGCAAG CCGTGCCGAC AATGCGATCA AGTATGTCGG TACGTTTGGA GGCGTCACGG CTTCCGCACT GTATAGCTTC CGCTACAACG GCCAAGAAGT CCCTGGCCAG ACCAGCCGCG GCGCTGAGTA CTCGGCCGGC CTGAACTACG CTACTGGCCC GCTGTCGGTT GGCGCTGTGT ATGACCAGGT GCGCCTGGGT TTGACGGCAG GTGTTGCCGA CACGGGTGCG AAGATCCAGC GTGCAACGAT TGCTGGCACC TATATGTTTG GTCCGGCCAA GGTGTTCGGT GGCTGGCGTT GGGCAAACCA GACGATGGCC GACAACCACG TACGTTCGAA CCTGTGGTGG ACGGGCCTGG GCTATCAGGT GACACCGGCT CTGTCGTTGA CCGGCGCGGT TTACTATCAG GCCTTCCACC AGACTTCGGC TGATCCTTGG ACGCTGGTGG CTTCGGCTGA CTACGCGTTG TCCAAGCGTA CTGATCTCTA TCTGAACATG GCCTATGCCA TTAACAAGAA GGATAGCGAC CGGGGCATCG TGTCGGTAGT TGGCGTGAGC AATGCTGATC AGCCAATCAA TGGACAGAAC CAGTTCGGCG CCGTTGTCGG CATCCGTCAC AAGTTCTGA
|
Protein sequence | MKIKMLTAAV VALASTGAFA QSSVTMYGVA DVGIEYLTHA GGDNSTVRMS SGNLSGSRWG LRGTEDLGGG LKGIFTLESG INIDTGSGAD SSRMFNRQAF VGLQKDGIGT LTLGRQQTLL YDFGLNYDPM AIATRYSIIG QDGAFASRAD NAIKYVGTFG GVTASALYSF RYNGQEVPGQ TSRGAEYSAG LNYATGPLSV GAVYDQVRLG LTAGVADTGA KIQRATIAGT YMFGPAKVFG GWRWANQTMA DNHVRSNLWW TGLGYQVTPA LSLTGAVYYQ AFHQTSADPW TLVASADYAL SKRTDLYLNM AYAINKKDSD RGIVSVVGVS NADQPINGQN QFGAVVGIRH KF
|
| |